PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05834.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 422aa    MW: 47913.4 Da    PI: 8.4933
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05834.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS430.81.1e-131434222374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn...sseelaalkl 83 
                              ++lL++cAe +s +d+++a++lL+ ls+++sp gd+++Rl++ ft+AL+ rl+r  +s++++ ++p ++  ++   ss++la  + 
  Sme2.5_05834.1_g00004.1  43 RQLLISCAELISRSDFSAAKRLLTILSTNSSPFGDSTERLVHQFTRALSLRLNRyISSTTSHFMTPVTNVVETdssSSSSLALIQS 128
                              89****************************************************44445555555544433333333333333333 PP

                     GRAS  84 ....fsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetger 164
                                  +++v+P+++f++ltaNqaIlea++g+ +++Hi+Dfdi++G+QWp+L+qaLa+R  ++p+lRiTg g+    + ++l++tg+r
  Sme2.5_05834.1_g00004.1 129 sylsLNQVTPFIRFTQLTANQAILEAINGNhHAIHIVDFDINHGVQWPPLMQALADR-YPAPTLRITGTGN----DLDTLRRTGDR 209
                              5668*************************98999**********************9.899**********....*********** PP

                     GRAS 165 LakfAeelgvpfefnvl...vakrledle...leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244
                              LakfA++lg++f+f++l     +r +d +   ++++ + p+E+la+n+v+ lhrll+++ +l+     +L+ vks++P++v+++e+
  Sme2.5_05834.1_g00004.1 210 LAKFAHSLGLRFQFHPLyiaSNNRDHDEDpsiISNIVLLPDETLAINCVFYLHRLLKDREKLRV----FLHRVKSMNPRIVTIAEK 291
                              *****************75322344455511145667778****************88888888....****************** PP

                     GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                              ea+hn++ Fl+rf+eal+yy+a+fdslea+lp+ s+er++vE++++greiv++va+eg++r+erhe++++W+ +l+++GF++v+ls
  Sme2.5_05834.1_g00004.1 292 EANHNHPLFLQRFVEALDYYTAVFDSLEATLPPGSRERMTVEQVWFGREIVDIVAMEGDKRKERHERFRSWEVMLRSCGFSNVALS 377
                              ************************************************************************************** PP

                     GRAS 331 ekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +a +qaklllr ++ s+gy++  +s+s++lgW+++pL+s+S+Wr
  Sme2.5_05834.1_g00004.1 378 PFALSQAKLLLRLHYpSEGYQLGVSSNSFFLGWQNQPLFSISSWR 422
                              ********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.03116401IPR005202Transcription factor GRAS
PfamPF035143.7E-12943422IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MLGSSSSSQS HPHHEESEDH QRRRFTAAAA TITTITSPAI QIRQLLISCA ELISRSDFSA  60
AKRLLTILST NSSPFGDSTE RLVHQFTRAL SLRLNRYISS TTSHFMTPVT NVVETDSSSS  120
SSLALIQSSY LSLNQVTPFI RFTQLTANQA ILEAINGNHH AIHIVDFDIN HGVQWPPLMQ  180
ALADRYPAPT LRITGTGNDL DTLRRTGDRL AKFAHSLGLR FQFHPLYIAS NNRDHDEDPS  240
IISNIVLLPD ETLAINCVFY LHRLLKDREK LRVFLHRVKS MNPRIVTIAE KEANHNHPLF  300
LQRFVEALDY YTAVFDSLEA TLPPGSRERM TVEQVWFGRE IVDIVAMEGD KRKERHERFR  360
SWEVMLRSCG FSNVALSPFA LSQAKLLLRL HYPSEGYQLG VSSNSFFLGW QNQPLFSISS  420
WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-614942125377Protein SCARECROW
5b3h_D6e-614942125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8097430.0FJ809743.1 Solanum pennellii chromosome 7 clone C07SpCP018I014.P4G10, complete sequence.
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346062.10.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-132SCL18_ARATH; Scarecrow-like protein 18
TrEMBLM1C0Q70.0M1C0Q7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000572650.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112982225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-129GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]