PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_05807.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | AP2 | ||||||||
Protein Properties | Length: 364aa MW: 41213.6 Da PI: 7.0562 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.6 | 2.7e-12 | 49 | 105 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ g ++ +e Aa a++ a++k++g Sme2.5_05807.1_g00002.1 49 SIYRGVTRHRWTGRYEAHLWDkNCWNEtQNKKGKQGAYDDEEAAAHAYDLAALKYWG 105 57*******************9999889775555599***9**************98 PP | |||||||
2 | AP2 | 51.2 | 3.1e-16 | 148 | 199 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Sme2.5_05807.1_g00002.1 148 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 199 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.64E-15 | 49 | 114 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.0E-8 | 49 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.782 | 50 | 113 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-20 | 50 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-13 | 50 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-6 | 51 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.09E-23 | 148 | 209 | No hit | No description |
Pfam | PF00847 | 5.8E-12 | 148 | 199 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-17 | 148 | 209 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.334 | 149 | 207 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-24 | 149 | 213 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 149 | 208 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-6 | 189 | 209 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MSNSTTSSTT SRNRIGKAKP SNRSDINAIG KVKRTRKSVP RDSPPQRSSI YRGVTRHRWT 60 GRYEAHLWDK NCWNETQNKK GKQGAYDDEE AAAHAYDLAA LKYWGQDTIL NFPVITYENE 120 LKEMEGQSKE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY 180 ATQEEAATAY DMAAIEYRGL NAVTNFDLSR YIKWLRPSDQ TNDNGTTNNT EPNPNPNPKP 240 NDVHLMPNTK EDINFSFVHQ EQQQQSSGCD VTIAALPHPG GGAATSSALG LLLQSSKFKE 300 MLERTSEVDC PETPPEPDRP RRSFPDDIQT YFDCQESSSF IEEHDIIFGD LDSLALPMFQ 360 CELN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 1e-140 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004235883.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 1e-117 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A3Q7FV65 | 0.0 | A0A3Q7FV65_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g117720.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1815 | 24 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 5e-89 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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