PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_05743.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

FAR1

Protein Properties

Length: 1054aa MW: 120580 Da PI: 6.9538

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05743.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.8	1.3e-26	168	270	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdg 74 fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e++ +ra +t+Cka+++vk++ dg Sme2.5_05743.1_g00001.1 168 FYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSanrprsrqgnkqdPENATGRRACAKTDCKASMHVKRRPDG 253 9*************************************999999899999888776555556699*************** PP FAR1 75 kwevtkleleHnHelap 91 kw ++++e+eHnHel p Sme2.5_05743.1_g00001.1 254 KWIIHRFEKEHNHELLP 270 ************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-24	168	270	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-24	368	460	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 1054 aa Download sequence Send to blast
MVVASLHMSW LWLLRLFVML SFPYYFLYPL YFCVVLLAAM LFAVRVEGLS KTTSLPPRGS 60 GKVSVEEELI GYQLFSSMDI DLRLPSQEHE KEEEEEEQNG IINMLDNEEK IHSDDGMHGM 120 LVIEEKMHAE DGGGMNTPIG TMIEFKEDVN LEPLAGMEFE SHGEAYAFYQ EYARSMGFNT 180 AIQNSRRSKT SREFIDAKFA CSRYGTKREY EKSANRPRSR QGNKQDPENA TGRRACAKTD 240 CKASMHVKRR PDGKWIIHRF EKEHNHELLP AQAVSEQTRR MYATMARQFA EYKNVVGMKS 300 DTKGPFDKGR HSAMEGGDIN VLLEFFTQMQ NLNSNFFYAV DVGEDQRVKN LFWVDAKARH 360 DYANFSDVVS FDTTYVRNKY KMPLALFVGV NQHFQFMLLG CALVSDESAS TFSWVMRTWL 420 KAMGGQAPKT VITDHELVLK SVISEALPLS LHYFFLWHIL GKVSETLNHV IKQNEKFMPK 480 FEKCINRSWT DEEFEKRWRK LVDKFDLREV ELIHSLYEEE AKAESDTWNK QPALRSPSPF 540 EKHLSGLYTH ALFKKFQAEW WTKDAKSKYI MTDGSEDVQS RFQRYNELCH RAMRLSEEGS 600 LSQENYSFVL RALDDAFGSC VTFNNSNKSM LEAGTSSASG LLCIEDDNQS RSMSKTNKKK 660 NNFAKKRKVN SEPDVMAVGA ADSLQQMDKL NSRPVALDGY FGPQQSVQGM VQLNLMAPTR 720 DNYYGNQQTI QGLGQLNSIA PPHDGYYGAQ PTLHGLGQMD FFRTPNFSYG IRDMTQLHIL 780 GDMALDGKEW RLRIRVEGQT TLWDKGKAIV VIDKGDCKSP TWGDRKKPTH DDGNIKGDGQ 840 LEAMPMVKHA KQQRMWQVRV EQCTWTSLKD ITTWRNEANG AKQDEYNEDP CPWRVQWLKL 900 GDANIAYFFA PLKNRVAQNT INSLMRTDGS KAQTQDELEH EVISLARQEE IELAVDGISD 960 KKAPGRDDFN TYFFKKTWPI IGADVIQAVL KFIYVSIHPS INCTMVTLIP KVANPTDLSL 1020 VAQLYTRGDV KSAKSLYGCF QLFLMPLILA LVVF

Sequence ? help Back to Top

Protein Sequence Length: 1054 aa Download sequence Send to blast

MVVASLHMSW LWLLRLFVML SFPYYFLYPL YFCVVLLAAM LFAVRVEGLS KTTSLPPRGS  60
GKVSVEEELI GYQLFSSMDI DLRLPSQEHE KEEEEEEQNG IINMLDNEEK IHSDDGMHGM  120
LVIEEKMHAE DGGGMNTPIG TMIEFKEDVN LEPLAGMEFE SHGEAYAFYQ EYARSMGFNT  180
AIQNSRRSKT SREFIDAKFA CSRYGTKREY EKSANRPRSR QGNKQDPENA TGRRACAKTD  240
CKASMHVKRR PDGKWIIHRF EKEHNHELLP AQAVSEQTRR MYATMARQFA EYKNVVGMKS  300
DTKGPFDKGR HSAMEGGDIN VLLEFFTQMQ NLNSNFFYAV DVGEDQRVKN LFWVDAKARH  360
DYANFSDVVS FDTTYVRNKY KMPLALFVGV NQHFQFMLLG CALVSDESAS TFSWVMRTWL  420
KAMGGQAPKT VITDHELVLK SVISEALPLS LHYFFLWHIL GKVSETLNHV IKQNEKFMPK  480
FEKCINRSWT DEEFEKRWRK LVDKFDLREV ELIHSLYEEE AKAESDTWNK QPALRSPSPF  540
EKHLSGLYTH ALFKKFQAEW WTKDAKSKYI MTDGSEDVQS RFQRYNELCH RAMRLSEEGS  600
LSQENYSFVL RALDDAFGSC VTFNNSNKSM LEAGTSSASG LLCIEDDNQS RSMSKTNKKK  660
NNFAKKRKVN SEPDVMAVGA ADSLQQMDKL NSRPVALDGY FGPQQSVQGM VQLNLMAPTR  720
DNYYGNQQTI QGLGQLNSIA PPHDGYYGAQ PTLHGLGQMD FFRTPNFSYG IRDMTQLHIL  780
GDMALDGKEW RLRIRVEGQT TLWDKGKAIV VIDKGDCKSP TWGDRKKPTH DDGNIKGDGQ  840
LEAMPMVKHA KQQRMWQVRV EQCTWTSLKD ITTWRNEANG AKQDEYNEDP CPWRVQWLKL  900
GDANIAYFFA PLKNRVAQNT INSLMRTDGS KAQTQDELEH EVISLARQEE IELAVDGISD  960
KKAPGRDDFN TYFFKKTWPI IGADVIQAVL KFIYVSIHPS INCTMVTLIP KVANPTDLSL  1020
VAQLYTRGDV KSAKSLYGCF QLFLMPLILA LVVF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:17012604, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:18715961, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253606	0.0	AC253606.5 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-18e18 map 7, complete sequence.
GenBank	AC253675	0.0	AC253675.4 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-42o4 map 7, complete sequence.
GenBank	BT013715	0.0	BT013715.1 Lycopersicon esculentum clone 132560F, mRNA sequence.
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBank	HG975519	0.0	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016580413.1	0.0	PREDICTED: LOW QUALITY PROTEIN: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Swissprot	Q9LIE5	0.0	FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A1U8HGX0	0.0	A0A1U8HGX0_CAPAN; LOW QUALITY PROTEIN: protein FAR-RED ELONGATED HYPOCOTYL 3-like
STRING	XP_009804946.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	far-red elongated hypocotyls 3

Publications ? help Back to Top
Chang N,Gao Y,Zhao L,Liu X,Gao H Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel. Sci Rep, 2015. 5: p. 9612 [PMID:25872642] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]