PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_05711.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Protein Properties

Length: 800aa MW: 88538.4 Da PI: 6.6754

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05711.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.4	1.3e-18	195	295	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 f+kvl+ sd+++ grlvlpk +ae++ +++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F Sme2.5_05711.1_g00002.1 195 FEKVLSASDAGRIGRLVLPKACAEAYfpSISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTF 279 99************************666677788***********99899999999.****************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++++ e++l+++++++ Sme2.5_05711.1_g00002.1 280 SRMD-PEGKLLMGFRKA 295 *876.888888888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.3E-29	189	299	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.32E-19	192	294	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.41E-22	193	294	No hit	No description
SMART	SM01019	8.7E-20	195	296	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.152	195	296	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.9E-16	195	295	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.202	459	509	IPR011124	Zinc finger, CW-type
Pfam	PF07496	6.0E-12	464	506	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 800 aa Download sequence Send to blast
MESKICMNGL CGATSSIEWK KGWPLRSGEF ASLCDKCGTA YEQLVFCDLF HSEDTGWREC 60 ISCGKTPNHE KPKAFGTSIS NSIGETASTS LGSHMNGSEP NKREGSDGID PALLLPHQND 120 KTNRPIGQIK MEEAVHPAGE SGSTFSSNLC QASAESSKNS KLDSYKKPLA QTPQIHLCFG 180 TRCECCSNST IIPLFEKVLS ASDAGRIGRL VLPKACAEAY FPSISQPEGL PLRIQDVKGK 240 EWVFQFRFWP NNNSRMYVLE GVTPCIQSMQ LQAGDTVTFS RMDPEGKLLM GFRKASTVNS 300 TQENRLPSIP KSVFSTEPTF FSAMPENLPL MSGYSGLLQS FKGSRESSLN LSSKHFNSGD 360 FSWYLTEKNG GKNADGAFTP SMPVSERKRS RKIGSKSKRL LIDSHDALEL KLSWEELQDM 420 LRPPLSVQPT TVTIEDHEFE EYELPPVLGK RSIFTVRLSG EQEQWAQCDN CFKWRKLPAD 480 YLLPPQWTCQ DNISDHSRSS CSVPDDLTPS ELENLLKMDK GEVTSCFSFS VHFDHATADL 540 KKQRSATGQM STQAYDSSDL DAQGNGISIA GNVREPGATS VATTTKHPRH RPGCSCIVCI 600 QPPSGKGKHN PTCTCNVCMT VKRRFKTLMM RKKKRQSERE AELGQRNQLM WSSKEETEVD 660 SFSRQVKPEV DPSDKERSGS ETLARGHSSN QLQKLPEISK SQLDLNCHPN REDTGSSHIS 720 MMSLLQQACL PLETYLRQNG LTSLVSEQQG SSGSLGLPQD TRESDPRVQE DLCLASTAQE 780 QEKDVAKESS EPDQGGKDYS

Sequence ? help Back to Top

Protein Sequence Length: 800 aa Download sequence Send to blast

MESKICMNGL CGATSSIEWK KGWPLRSGEF ASLCDKCGTA YEQLVFCDLF HSEDTGWREC  60
ISCGKTPNHE KPKAFGTSIS NSIGETASTS LGSHMNGSEP NKREGSDGID PALLLPHQND  120
KTNRPIGQIK MEEAVHPAGE SGSTFSSNLC QASAESSKNS KLDSYKKPLA QTPQIHLCFG  180
TRCECCSNST IIPLFEKVLS ASDAGRIGRL VLPKACAEAY FPSISQPEGL PLRIQDVKGK  240
EWVFQFRFWP NNNSRMYVLE GVTPCIQSMQ LQAGDTVTFS RMDPEGKLLM GFRKASTVNS  300
TQENRLPSIP KSVFSTEPTF FSAMPENLPL MSGYSGLLQS FKGSRESSLN LSSKHFNSGD  360
FSWYLTEKNG GKNADGAFTP SMPVSERKRS RKIGSKSKRL LIDSHDALEL KLSWEELQDM  420
LRPPLSVQPT TVTIEDHEFE EYELPPVLGK RSIFTVRLSG EQEQWAQCDN CFKWRKLPAD  480
YLLPPQWTCQ DNISDHSRSS CSVPDDLTPS ELENLLKMDK GEVTSCFSFS VHFDHATADL  540
KKQRSATGQM STQAYDSSDL DAQGNGISIA GNVREPGATS VATTTKHPRH RPGCSCIVCI  600
QPPSGKGKHN PTCTCNVCMT VKRRFKTLMM RKKKRQSERE AELGQRNQLM WSSKEETEVD  660
SFSRQVKPEV DPSDKERSGS ETLARGHSSN QLQKLPEISK SQLDLNCHPN REDTGSSHIS  720
MMSLLQQACL PLETYLRQNG LTSLVSEQQG SSGSLGLPQD TRESDPRVQE DLCLASTAQE  780
QEKDVAKESS EPDQGGKDYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	2e-60	188	302	17	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	621	632	KRRFKTLMMRKK
2	621	634	KRRFKTLMMRKKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254745	0.0	AC254745.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-30h11 map 10, complete sequence.
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBank	HG975522	0.0	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006362351.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A1U8EPU5	0.0	A0A1U8EPU5_CAPAN; B3 domain-containing protein Os07g0679700-like isoform X3
STRING	XP_009768196.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1491	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-169	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]