PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_05661.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 258aa MW: 28636.9 Da PI: 6.777 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 280.6 | 7.5e-86 | 1 | 258 | 29 | 301 |
GAGA_bind 29 mssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksids 110 m+++aerda+irern+al e+k a+aerdma lqrd+alaern+ + erd++++al l++ s++ +++g ++ sg+k+i + Sme2.5_05661.1_g00006.1 1 MAIMAERDAAIRERNMALEERKRAFAERDMAMLQRDAALAERNALIQERDDAIAALRLQDSSTNdnntVPDSPGNGTESGAKHIYN 86 899****************************************************9998888774422223344555555555554 PP GAGA_bind 111 lqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl 196 qq ++ +++ a + + + p+ +++++ ++ k pk++ ++ ++ + ++ +++ke+ + + +++k+ +l Sme2.5_05661.1_g00006.1 87 QQQ-MHRTTAEAAHG------SMEDPTAGYLNDTDT-------SEVKIPKRRSCSNSNR--DLQEMDSDKEG--DAQLTSWKD-NL 153 444.33333333333......222332222222221.......2233344444333333..22222333333..445667775.8* PP GAGA_bind 197 vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnp 282 +ln++++Des++ vPvCsCtG+++ CYkWG GGWqSaCCtttiS+yPLP+ +++r +R++grKmS+gaf+klL++Laa+Gydls p Sme2.5_05661.1_g00006.1 154 GLNQINFDESAMSVPVCSCTGTPQPCYKWGHGGWQSACCTTTISMYPLPQISNKRYSRVGGRKMSGGAFSKLLNRLAAQGYDLSIP 239 ************************************************************************************** PP GAGA_bind 283 vDLkdhWAkHGtnkfvtir 301 +DLkdhWAkHGtn++ t++ Sme2.5_05661.1_g00006.1 240 LDLKDHWAKHGTNRYSTLK 258 ***************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 3.4E-90 | 1 | 258 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 9.1E-80 | 1 | 258 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MAIMAERDAA IRERNMALEE RKRAFAERDM AMLQRDAALA ERNALIQERD DAIAALRLQD 60 SSTNDNNTVP DSPGNGTESG AKHIYNQQQM HRTTAEAAHG SMEDPTAGYL NDTDTSEVKI 120 PKRRSCSNSN RDLQEMDSDK EGDAQLTSWK DNLGLNQINF DESAMSVPVC SCTGTPQPCY 180 KWGHGGWQSA CCTTTISMYP LPQISNKRYS RVGGRKMSGG AFSKLLNRLA AQGYDLSIPL 240 DLKDHWAKHG TNRYSTLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ982313 | 0.0 | FJ982313.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016560524.1 | 1e-176 | PREDICTED: barley B recombinant-like protein D | ||||
Swissprot | Q5VSA8 | 3e-80 | BBRD_ORYSJ; Barley B recombinant-like protein D | ||||
TrEMBL | A0A1U8FXT2 | 1e-174 | A0A1U8FXT2_CAPAN; barley B recombinant-like protein D | ||||
TrEMBL | A0A2G2YPY1 | 1e-174 | A0A2G2YPY1_CAPAN; Uncharacterized protein (Fragment) | ||||
STRING | PGSC0003DMT400009137 | 1e-170 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8062 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.2 | 2e-76 | basic pentacysteine 6 |
Publications ? help Back to Top | |||
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