PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05650.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 566aa    MW: 63678.7 Da    PI: 6.8904
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05650.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS238.92.2e-731795552374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              ++lL  cA a+++g+l+++q+lL  l+el+s +gd+++Rlaa  ++AL + l+  ++  y+ +++ +++  n +   ++l  f+++
  Sme2.5_05650.1_g00002.1 179 EQLLNPCAAAITAGNLNRVQHLLYVLHELSSLNGDANHRLAARGLQALTHYLSTPCPASYAGVTTFAST--NPKFFKNSLINFNDI 262
                              689******************************************************999988888777..57777777777**** PP

                     GRAS  88 sPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeelee 160
                              sP++++ + +aN+ Il+ + ++   + +Hi+D+++s+G+QWp+Ll++L+ R+ ++pp +R+T++ +  ++               +
  Sme2.5_05650.1_g00002.1 263 SPWFRIPNSIANSSILQILGKHdssKNLHILDIGVSHGVQWPTLLEELTHRSgGPPPLVRLTVITPTIEDdrqrnspfvVGPDGYN 348
                              ******************9998777899************************55666*******9976667777877776777889 PP

                     GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqea 246
                                 +L  fA+++++++++n l    l++l+ + ++ +++E l+++ +++lh+l    ++ ++er+ +Lk++ksl+Pk +v++e+++
  Sme2.5_05650.1_g00002.1 349 FSAQLLAFAKAININLQINRLENYPLQNLNSQVINSSSDEILVICAQFRLHNLK---HKNPDERTGLLKILKSLEPKGLVLSENNM 431
                              999*****************9888*****************************8...77777789********************8 PP

                     GRAS 247 dh..ns.esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                              d+  ns ++F +rf++ +ey ++++ds+++ +    + r +  r++++ e+ +++++ g++    +e++ekW er++++GF    +
  Sme2.5_05650.1_g00002.1 432 DCscNScGDFTTRFSRRVEYLWKFLDSTSVAY----KGRESEGRRMMEGEAAKALTNMGEM----NERKEKWCERMRTVGFMWEMF 509
                              875444259*******************8875....4555555555666799999999999....88888**************** PP

                     GRAS 330 sekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              ++ a + a++llrk++ ++++rv+e++ ++ l Wk++p+ ++S W+
  Sme2.5_05650.1_g00002.1 510 GDAAIDRAHALLRKYDsNWEMRVDEKDVCVGLWWKGEPVSFCSLWK 555
                              ****************9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.251152534IPR005202Transcription factor GRAS
PfamPF035147.7E-71179555IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MIRHQHQAIL SHHPSSSICD TMTIDEPEHE PTFDPISEWL DAPLSYFPSL LDESYSLDDL  60
LEDSWWAPSE NMNQEIHNNN SNNNNSLRCF DTSFAVTSAS TVSLEPIISS HLPPLVSPKK  120
RKGNDSGYNP KASRKNQNRR INDADDGEAI VVQRVTTRKT AGNKKAGNNG NNKEGRWAEQ  180
LLNPCAAAIT AGNLNRVQHL LYVLHELSSL NGDANHRLAA RGLQALTHYL STPCPASYAG  240
VTTFASTNPK FFKNSLINFN DISPWFRIPN SIANSSILQI LGKHDSSKNL HILDIGVSHG  300
VQWPTLLEEL THRSGGPPPL VRLTVITPTI EDDRQRNSPF VVGPDGYNFS AQLLAFAKAI  360
NINLQINRLE NYPLQNLNSQ VINSSSDEIL VICAQFRLHN LKHKNPDERT GLLKILKSLE  420
PKGLVLSENN MDCSCNSCGD FTTRFSRRVE YLWKFLDSTS VAYKGRESEG RRMMEGEAAK  480
ALTNMGEMNE RKEKWCERMR TVGFMWEMFG DAAIDRAHAL LRKYDSNWEM RVDEKDVCVG  540
LWWKGEPVSF CSLWKIDPNT LSAQGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B5e-3317555584473Protein SHORT-ROOT
5b3h_B3e-3317555530419Protein SHORT-ROOT
5b3h_E3e-3317555530419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361338.10.0PREDICTED: nodulation-signaling pathway 1 protein-like
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A2G2Y9550.0A0A2G2Y955_CAPAN; Nodulation-signaling pathway 1 protein
STRINGXP_009594760.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49492139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-137GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]