PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_05640.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 330aa MW: 36749.8 Da PI: 7.5919 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.4 | 1.5e-17 | 42 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g Sme2.5_05640.1_g00001.1 42 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 91 69*******.**********93....35999**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.6E-11 | 42 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-21 | 42 | 99 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.089 | 42 | 99 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.21E-30 | 42 | 98 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-29 | 42 | 98 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.5E-34 | 42 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-9 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-9 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MEDAMRLLNQ ESLQNTTNSG KTRCATNKRS LKDNSSGGSS VRYRGVRRRP WGRYAAEIRD 60 PQSKERRWLG TFDTAEEAAC AYDCAARAMR GVKARTNFVY PSPTQTTCTN DAFLGIHGSI 120 KSSSSYYHHQ SCNTLKDLSN KPFFHSSNTP YGRVQKSNDS LNMLLVSSSM NSYPNFMFHR 180 NGFSSYLPTT HSIIPSSSVM TTHLPKFENI MTVSSNSTTT HDSAAGMDFF PSESSDSGLL 240 EEALNGFFPK PIKSEPTLFP QQQQQQQLIN DGLNTEFGFL SETMSSTSSS FPLDYIPGNL 300 QGSPEEHNMM GDIFQYPDLL SIFAAKMQNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-19 | 43 | 98 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 3e-19 | 37 | 98 | 9 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016552721.1 | 1e-142 | PREDICTED: ethylene-responsive transcription factor ESR1-like | ||||
Refseq | XP_016557500.1 | 1e-142 | PREDICTED: ethylene-responsive transcription factor ESR1-like | ||||
TrEMBL | A0A2G2VN09 | 1e-141 | A0A2G2VN09_CAPBA; Ethylene-responsive transcription factor LEP | ||||
STRING | Solyc05g013540.1.1 | 1e-134 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 1e-14 | DORNROSCHEN-like |