PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_05446.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 159aa MW: 18744.5 Da PI: 5.1728 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 48.8 | 1.2e-15 | 7 | 109 | 109 | 209 |
GRAS 109 e.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrl.edl 189 + +++Hi+D+d++ G+QWp++++a+ ++ l+ T + + e++ ++ + ee+++rL ++A+ +g++++ + +++++l ++l Sme2.5_05446.1_g00006.1 7 DvQTIHIVDYDMGRGIQWPPIIEAMGQKG---KALKFTSIRKTEEEstgDQWRFEEMKKRLVDYANPFGLTLQVEEMTVEELaSEL 89 4489**********************974...4699999998777677899************************99665441455 PP GRAS 190 eleeLrvkpgEalaVnlvlq 209 + + r k+ E l+ n+ Sme2.5_05446.1_g00006.1 90 TRMKKRGKKSEFLVFNWLQG 109 55555666699999999765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 15.063 | 1 | 159 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.3E-13 | 7 | 109 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MEAIPDDVQT IHIVDYDMGR GIQWPPIIEA MGQKGKALKF TSIRKTEEES TGDQWRFEEM 60 KKRLVDYANP FGLTLQVEEM TVEELASELT RMKKRGKKSE FLVFNWLQGM RVSKENLLQA 120 KEVVNERETP FRVRIEEERQ YEIVLEWKGT SLARVSTWM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 9e-48 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015169942.1 | 3e-53 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | M1CJ59 | 7e-52 | M1CJ59_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400068507 | 1e-52 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5361 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 1e-07 | GRAS family protein |