PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05394.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 356aa    MW: 41174.5 Da    PI: 4.437
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05394.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-1967125155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              ++y+GVr++  +g+WvAeIr   ++ ++   + kr +lg+f ta+eAa a+++a+k+++g
  Sme2.5_05394.1_g00005.1  67 CKYRGVRQRT-WGKWVAEIRQpIYIsDKyrSNgKRLWLGTFSTADEAAVAYDEAAKAMYG 125
                              79*****999.**********777788895448************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.84E-3267134No hitNo description
PfamPF008478.5E-1467125IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2068134IPR016177DNA-binding domain
SMARTSM003801.7E-3568139IPR001471AP2/ERF domain
PROSITE profilePS5103222.91968133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-2968134IPR001471AP2/ERF domain
PRINTSPR003673.8E-106980IPR001471AP2/ERF domain
PRINTSPR003673.8E-1099115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MNFFSNRKRR RNGSDSIEEI LLRWKNFKEE VHCRDEEAKV KKKRKWGANG SQKRCMQGKG  60
GPENWSCKYR GVRQRTWGKW VAEIRQPIYI SDKYRSNGKR LWLGTFSTAD EAAVAYDEAA  120
KAMYGSNALL NFPDCSDSSI TPTSSLESSV EHEIESDLKS SDGVVVNTDL SYYCSNQDSF  180
QSSCVRVETP ITEEEIDLEN FNFNDIDVKP RPDDQIVLQD MDYSNNILQE QPLDLRCSEN  240
LNEDIRMRLE YIEHCLMEDD WSMEATNISD AFRLPENHDE AYNFLKCLEE PFDFKPMKEP  300
QETNSEKNLN VFGFDDFGAG KLHSLQPSSS VISRQPEDNI QDLSDFDVLS YINDIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2069133360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1610RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159004.11e-125PREDICTED: uncharacterized protein LOC107058148
TrEMBLM1BAV21e-123M1BAV2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000410641e-124(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79651530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.13e-30ERF family protein