PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05389.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 311aa    MW: 35282.3 Da    PI: 7.2382
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05389.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.8e-161462148
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                             rg+W++eEd +l++ + ++G+g +W + +++ g++R++k+c++rw++yl
  Sme2.5_05389.1_g00004.1 14 RGPWSPEEDAKLKEFIDKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                             89*********************************************97 PP
2Myb_DNA-binding383.8e-1269111246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              g ++ eEd  +  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Sme2.5_05389.1_g00004.1  69 GDFSDEEDRVICSLYASIGSR-WSIIAAQLP-GRTDNDIKNHWNT 111
                              679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.18962IPR017930Myb domain
SuperFamilySSF466892.83E-2711109IPR009057Homeodomain-like
SMARTSM007173.6E-121364IPR001005SANT/Myb domain
PfamPF002494.5E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-241569IPR009057Homeodomain-like
CDDcd001672.29E-91662No hitNo description
PROSITE profilePS5129423.21563117IPR017930Myb domain
SMARTSM007175.5E-1167115IPR001005SANT/Myb domain
PfamPF002491.4E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2370117IPR009057Homeodomain-like
CDDcd001677.87E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGRAPCCDKN NVKRGPWSPE EDAKLKEFID KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSDEEDRVIC SLYASIGSRW SIIAAQLPGR TDNDIKNHWN TKLKKKLMGF  120
IQSSPNNQRI KSPNSLFPPT STLQTTFQPQ SQASISSLFR DSYVEPIPLI QPNFMYNNNN  180
IMNFQLGITN NQYSSNFHDQ SLMNPMQAVS CCSPSDGVSY NQISYGNEET MCQIPFEETQ  240
KFTLDNYCSS WADHDQKPNG SFGNNFQSCQ FQYDTNIEEV KELISSSSSN GNGCNNVGYG  300
VNFNFNSYEY L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347251.11e-178PREDICTED: transcription factor RAX1-like
TrEMBLA0A3Q7H0Q31e-170A0A3Q7H0Q3_SOLLC; Uncharacterized protein
STRINGSolyc06g074910.2.11e-171(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-78myb domain protein 36