PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05345.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 253aa    MW: 29819.2 Da    PI: 8.7178
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05345.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27e-17449147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             rg W + Ede+l+++v+++G+++W++Ia  ++  R++k+c++rw++ 
  Sme2.5_05345.1_g00002.1  4 RGHWRPHEDEKLKELVAKYGPHNWNAIALNLQ-ARSGKSCRLRWYNQ 49
                             899*****************************.************96 PP

2Myb_DNA-binding551.9e-175699146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                             r ++T+eE+e+l+  ++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Sme2.5_05345.1_g00002.1 56 RSPFTEEEEERLLSSHRIHGNR-WAMIARLFP-GRTDNAVKNHWHV 99
                             789*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.206150IPR017930Myb domain
SuperFamilySSF466894.12E-29397IPR009057Homeodomain-like
SMARTSM007171.2E-14352IPR001005SANT/Myb domain
PfamPF002493.8E-16450IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-25557IPR009057Homeodomain-like
CDDcd001672.42E-13748No hitNo description
PROSITE profilePS5129426.33151105IPR017930Myb domain
SMARTSM007175.8E-1555103IPR001005SANT/Myb domain
PfamPF002495.9E-145698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2158104IPR009057Homeodomain-like
CDDcd001672.92E-65898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MVNRGHWRPH EDEKLKELVA KYGPHNWNAI ALNLQARSGK SCRLRWYNQL DPRINRSPFT  60
EEEEERLLSS HRIHGNRWAM IARLFPGRTD NAVKNHWHVI MSRKCRERSK IYSNRAAQKS  120
LNQLQDDDIR KRSCNAFNID HQQLLERYNN CYQFTNGDRN SMYPKELHFN HMMTHPHFNM  180
DNQGKNEEVE CYDFLQVNNR AGSNKSEVID HIAIRRGTDE EVEQQNGNDN NISSQTIKAP  240
VKFIDFLSVG DSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-3341057108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-103HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755151e-103HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364393.11e-138PREDICTED: transcriptional activator Myb-like isoform X2
SwissprotQ6R0C41e-71MYB52_ARATH; Transcription factor MYB52
TrEMBLM1D2B81e-137M1D2B8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000797141e-137(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17842466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73410.19e-71myb domain protein 54
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]