PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_05282.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 515aa MW: 58491.4 Da PI: 5.3085 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 343 | 5.1e-105 | 117 | 508 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn............. 73 l++lL++cA+av+sgd+e a++ L+++++ +sp+gd qRla++f+ +L+arl+r + +l+k p + + Sme2.5_05282.1_g00003.1 117 LRTLLTSCAQAVASGDQESASEKLKQIRQESSPTGDKYQRLASVFADGLEARLSRGGATLSKGGPIEFLTLPGtavqpyptlapkk 202 6789***************************************************9998887544332221111234555666667 PP GRAS 74 ...sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..s 154 +++l+a+++ +P++k s aN++I + +++++HiiDf+i +G+QWp L+q L+s p+gpp+lRiTg++ p++g Sme2.5_05282.1_g00003.1 203 mtnAADNLKAYNVHLSSCPFIKASIAFANKMIFHTARNATTLHIIDFGILYGFQWPVLIQRLSSMPGGPPKLRITGIDLPQPGfrP 288 77799999999***********************************************************************9*** PP GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal.aVnlvlqlhrlldesvsleserdevLklvkslsPkvv 239 ++ l etg+rLa +++++++pfe+n+++++++e +el++L++++gE++ aVn+ ++ ++l de +++e +rd+vL+l+++++P+++ Sme2.5_05282.1_g00003.1 289 AQVLAETGRRLATYCQRFNIPFEYNAIAEQNWERIELKDLKLESGEVVaAVNCLFRFENLSDEGMDVECPRDAVLSLIRKMNPDIF 374 **************************9999****************9946************************************ PP GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325 v + ++++ns+ F++rf eal +ysalfd+++a+lpr++++r E+e+ +re++nv+acegaer+er et+e+W+ r e+ GFk Sme2.5_05282.1_g00003.1 375 VQAVTNSSYNSPFFVTRFQEALLHYSALFDMFDATLPRDDQQRLHFEQEVYRREAMNVIACEGAERVERPETYEQWQVRNERTGFK 460 ************************************************************************************** PP GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +pl+++++k+ k ++ + + + + e+ +++v+gWkdr + ++S+W Sme2.5_05282.1_g00003.1 461 ILPLDQEVMKTLKDKVKAEYHRDFVLYEDGNWMVQGWKDRIICATSCW 508 *****************999899************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.44 | 91 | 489 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-102 | 117 | 508 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MDTEKFKKCF PPMNCYVMRI QNSRDFDVMD PRFNDMTDPT NNSKLEDQTV LSSFDQPLHK 60 DESSNEQSAE YAEEVELAEM FDMVLLCTHA KGKKVSTDIN SEISSEGKET KISAVDLRTL 120 LTSCAQAVAS GDQESASEKL KQIRQESSPT GDKYQRLASV FADGLEARLS RGGATLSKGG 180 PIEFLTLPGT AVQPYPTLAP KKMTNAADNL KAYNVHLSSC PFIKASIAFA NKMIFHTARN 240 ATTLHIIDFG ILYGFQWPVL IQRLSSMPGG PPKLRITGID LPQPGFRPAQ VLAETGRRLA 300 TYCQRFNIPF EYNAIAEQNW ERIELKDLKL ESGEVVAAVN CLFRFENLSD EGMDVECPRD 360 AVLSLIRKMN PDIFVQAVTN SSYNSPFFVT RFQEALLHYS ALFDMFDATL PRDDQQRLHF 420 EQEVYRREAM NVIACEGAER VERPETYEQW QVRNERTGFK ILPLDQEVMK TLKDKVKAEY 480 HRDFVLYEDG NWMVQGWKDR IICATSCWIP LHRSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-41 | 124 | 510 | 25 | 379 | Protein SCARECROW |
5b3h_D | 3e-41 | 124 | 510 | 25 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015169567.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 1e-166 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | M0ZPY5 | 0.0 | M0ZPY5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400005480 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-168 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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