PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05282.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 515aa    MW: 58491.4 Da    PI: 5.3085
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05282.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3435.1e-1051175081373
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn............. 73 
                              l++lL++cA+av+sgd+e a++ L+++++ +sp+gd  qRla++f+ +L+arl+r + +l+k  p +  +                
  Sme2.5_05282.1_g00003.1 117 LRTLLTSCAQAVASGDQESASEKLKQIRQESSPTGDKYQRLASVFADGLEARLSRGGATLSKGGPIEFLTLPGtavqpyptlapkk 202
                              6789***************************************************9998887544332221111234555666667 PP

                     GRAS  74 ...sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..s 154
                                  +++l+a+++    +P++k s   aN++I   + +++++HiiDf+i +G+QWp L+q L+s p+gpp+lRiTg++ p++g   
  Sme2.5_05282.1_g00003.1 203 mtnAADNLKAYNVHLSSCPFIKASIAFANKMIFHTARNATTLHIIDFGILYGFQWPVLIQRLSSMPGGPPKLRITGIDLPQPGfrP 288
                              77799999999***********************************************************************9*** PP

                     GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal.aVnlvlqlhrlldesvsleserdevLklvkslsPkvv 239
                              ++ l etg+rLa +++++++pfe+n+++++++e +el++L++++gE++ aVn+ ++ ++l de +++e +rd+vL+l+++++P+++
  Sme2.5_05282.1_g00003.1 289 AQVLAETGRRLATYCQRFNIPFEYNAIAEQNWERIELKDLKLESGEVVaAVNCLFRFENLSDEGMDVECPRDAVLSLIRKMNPDIF 374
                              **************************9999****************9946************************************ PP

                     GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                              v +  ++++ns+ F++rf eal +ysalfd+++a+lpr++++r   E+e+ +re++nv+acegaer+er et+e+W+ r e+ GFk
  Sme2.5_05282.1_g00003.1 375 VQAVTNSSYNSPFFVTRFQEALLHYSALFDMFDATLPRDDQQRLHFEQEVYRREAMNVIACEGAERVERPETYEQWQVRNERTGFK 460
                              ************************************************************************************** PP

                     GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               +pl+++++k+ k  ++  + + + + e+ +++v+gWkdr + ++S+W
  Sme2.5_05282.1_g00003.1 461 ILPLDQEVMKTLKDKVKAEYHRDFVLYEDGNWMVQGWKDRIICATSCW 508
                              *****************999899************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.4491489IPR005202Transcription factor GRAS
PfamPF035141.8E-102117508IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MDTEKFKKCF PPMNCYVMRI QNSRDFDVMD PRFNDMTDPT NNSKLEDQTV LSSFDQPLHK  60
DESSNEQSAE YAEEVELAEM FDMVLLCTHA KGKKVSTDIN SEISSEGKET KISAVDLRTL  120
LTSCAQAVAS GDQESASEKL KQIRQESSPT GDKYQRLASV FADGLEARLS RGGATLSKGG  180
PIEFLTLPGT AVQPYPTLAP KKMTNAADNL KAYNVHLSSC PFIKASIAFA NKMIFHTARN  240
ATTLHIIDFG ILYGFQWPVL IQRLSSMPGG PPKLRITGID LPQPGFRPAQ VLAETGRRLA  300
TYCQRFNIPF EYNAIAEQNW ERIELKDLKL ESGEVVAAVN CLFRFENLSD EGMDVECPRD  360
AVLSLIRKMN PDIFVQAVTN SSYNSPFFVT RFQEALLHYS ALFDMFDATL PRDDQQRLHF  420
EQEVYRREAM NVIACEGAER VERPETYEQW QVRNERTGFK ILPLDQEVMK TLKDKVKAEY  480
HRDFVLYEDG NWMVQGWKDR IICATSCWIP LHRSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-4112451025379Protein SCARECROW
5b3h_D3e-4112451025379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169567.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE581e-166SCL14_ARATH; Scarecrow-like protein 14
TrEMBLM0ZPY50.0M0ZPY5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000054800.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-168SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]