PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05222.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 505aa    MW: 54905.5 Da    PI: 7.8069
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05222.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1084.4e-34216272259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  Sme2.5_05222.1_g00004.1 216 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 272
                              8****************************************.***************8 PP
2WRKY107.19.1e-34391449159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  Sme2.5_05222.1_g00004.1 391 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSQGCNVRKHVERAASDPKAVITTYEGKHNHD 449
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.03210274IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.6E-30212274IPR003657WRKY domain
SuperFamilySSF1182902.88E-26213274IPR003657WRKY domain
SMARTSM007743.0E-38215273IPR003657WRKY domain
PfamPF031066.0E-26216272IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37377451IPR003657WRKY domain
SuperFamilySSF1182905.75E-30383451IPR003657WRKY domain
PROSITE profilePS5081139.192386451IPR003657WRKY domain
SMARTSM007742.9E-40391450IPR003657WRKY domain
PfamPF031062.4E-26392449IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MAENEGSSSS TSRGQLLRPT ITLPPRNSME SLFSGGSSGI SPGPMTLVSS FFSDNDPDSE  60
CRSFSQLLAG AVTPPAGFPG ARPGFPPLTP PGTAAISQLP TPAFAVPPGL SPTSLFDGFF  120
SPGQGPFGMS HQQVLTQFTA QASQAQSQMQ IQPNYSSSAT AVAPSMSQFQ SLTSNAAANK  180
QIPPTLDPNI AKESSDVSLS DQRSEPACFA VDKPADDGYN WRKYGQKQVK GSEYPRSYYK  240
CTHPNCPVKK KVERSLDGQV TEIIYKGQHN HQPPQASKRS KESGNPNGSY NPYELSSEGL  300
TGNFNKSKEG EPSYSLRMKD QESSQANDQT SGSSDSEEVG NAETRVDGSY IDERESKRRA  360
VEVQSSEAAC SHRTVAEPRI IVQTTSEVDL LDDGYRWRKY GQKVVKGNPY PRSYYKCTSQ  420
GCNVRKHVER AASDPKAVIT TYEGKHNHDV PAARNSSHNT ANNAVSQLRP NFPVVDKPAA  480
MRRADFQSNE QQPIALLRFK EEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-42216452878Probable WRKY transcription factor 4
2lex_A2e-42216452878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111250.0AB711125.1 Solanum tuberosum StWRKY12 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239088.10.0probable WRKY transcription factor 4
SwissprotQ9ZQ701e-158WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLM1CR160.0M1CR16_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000728360.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-146WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]