PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05212.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 66aa    MW: 7406.48 Da    PI: 8.2213
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05212.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271.1e-081443129
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIar 29
                             rg+W++eEde+l+d ++++G+  +W + ++
  Sme2.5_05212.1_g00003.1 14 RGPWSPEEDEKLKDFINKFGTAgNWIALPQ 43
                             89******************9889977666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-11545IPR009057Homeodomain-like
SuperFamilySSF466891.35E-7949IPR009057Homeodomain-like
PROSITE profilePS500907.399949IPR017877Myb-like domain
PfamPF002495.3E-71446IPR001005SANT/Myb domain
CDDcd001675.42E-51640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDEKLKDFIN KFGTAGNWIA LPQKAEIRRG GGDILDFISL  60
DVRNLF
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF4965863e-36JF496586.1 Capsicum annuum BLIND (BLIND) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340126.11e-27PREDICTED: transcription factor RAX2-like
SwissprotQ9SJL71e-25RAX2_ARATH; Transcription factor RAX2
TrEMBLM1AEE39e-26M1AEE3_SOLTU; Uncharacterized protein
STRINGSolyc11g069030.1.13e-26(Solanum lycopersicum)
STRINGPGSC0003DMT4000209792e-26(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.16e-28MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]