PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05200.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 540aa    MW: 60210.6 Da    PI: 5.5726
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05200.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.81.5e-1291715402374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              +elLl+cAea+s+++l++a+ l++ l++ +s +g+pmqRl ay++e+L+arl++s+s++yk l+++e +   sse ++++++++++
  Sme2.5_05200.1_g00006.1 171 KELLLACAEAISDSELSAADVLMNVLEQKVSVSGEPMQRLSAYMLEGLRARLYSSGSTIYKMLKCNEPT---SSELISYMQVLYHI 253
                              789*****************************************************************9...9************* PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171
                              +P++kf++  aN  I ea+ +e+r+HiiDf+i qG QW+ L++ La Rp+gpp + iTgv++++s   +   l+ +gerLakfAe+
  Sme2.5_05200.1_g00006.1 254 CPYYKFAYTSANVVIEEAMRNESRIHIIDFQIAQGSQWMFLMKNLARRPGGPPFVHITGVDDSQSAhaRGGGLQLLGERLAKFAES 339
                              **************************************************************9988889999************** PP

                     GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                              +gvpfef++ +a +   ++le+L++++gEalaVn+ ++lh+++desvs+e++rd++L+lvk+lsPk+v++veqe+++n++ Fl rf
  Sme2.5_05200.1_g00006.1 340 CGVPFEFHA-AAISGCGVHLENLEIRQGEALAVNFPYMLHHMPDESVSTENHRDRLLRLVKRLSPKIVTLVEQESNTNTSAFLPRF 424
                              *********.78899999******************************************************************** PP

                     GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                               e+l+yy+a+f+s++a  pr++++ri  E+++++r++vn++acega+r+erhe ++kW +rl++aGF+p pls ++ + +  +l++
  Sme2.5_05200.1_g00006.1 425 HETLDYYTAMFESIDAARPRDDKQRIRAEEHCVARDVVNIIACEGADRVERHELFGKWCMRLRMAGFTPCPLSPSVGAAIIDVLKE 510
                              ************************************************************************************** PP

                     GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              ++ + yrv e++g+l+lgWk+r+L + SaWr
  Sme2.5_05200.1_g00006.1 511 FSPN-YRVAESNGALYLGWKNRALATSSAWR 540
                              **55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.345144521IPR005202Transcription factor GRAS
PfamPF035145.1E-127171540IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MHASQIPQPS GEVHKLCHQP TANLEQYYSP SLVVNNNSND TSSSGTQFSY QTRNEKFFTL  60
DSSPDAGYGI YDSTPAVSVS SNWSPFSPQF SQSYISDQHH SSENTYGSPL SGCSINNDGN  120
ELRQVLREMA IDLLGPESDI DEYSSCSFNG EVSNPSKWNR VLENASSLDM KELLLACAEA  180
ISDSELSAAD VLMNVLEQKV SVSGEPMQRL SAYMLEGLRA RLYSSGSTIY KMLKCNEPTS  240
SELISYMQVL YHICPYYKFA YTSANVVIEE AMRNESRIHI IDFQIAQGSQ WMFLMKNLAR  300
RPGGPPFVHI TGVDDSQSAH ARGGGLQLLG ERLAKFAESC GVPFEFHAAA ISGCGVHLEN  360
LEIRQGEALA VNFPYMLHHM PDESVSTENH RDRLLRLVKR LSPKIVTLVE QESNTNTSAF  420
LPRFHETLDY YTAMFESIDA ARPRDDKQRI RAEEHCVARD VVNIIACEGA DRVERHELFG  480
KWCMRLRMAG FTPCPLSPSV GAAIIDVLKE FSPNYRVAES NGALYLGWKN RALATSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6217753925377Protein SCARECROW
5b3h_D2e-6217753925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892870.0AC189287.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 5 clone C05HBa0166A02, complete sequence.
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554161.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_016554162.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_016554163.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A2G3CJ540.0A0A2G3CJ54_CAPCH; Scarecrow-like protein 5
STRINGPGSC0003DMT4000217480.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13