PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05193.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 351aa    MW: 40689.6 Da    PI: 10.3869
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05193.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-141462148
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+ Ed+ll +++kq+G g  W++ +++ g+ R++k+c++rw +yl
  Sme2.5_05193.1_g00003.1 14 KGAWTKKEDLLLTEYIKQYGEGtGWRSLPKKAGLLRCGKSCRLRWVNYL 62
                             79********************99*********99************97 PP
2Myb_DNA-binding54.23.4e-1768112147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg++T+eEd+l+v++ ++lG++ W++Ia +++ gRt++++k++w++ 
  Sme2.5_05193.1_g00003.1  68 RGAFTPEEDDLIVRLYNLLGSR-WSLIAGRVP-GRTDNDIKNYWNTN 112
                              89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.078962IPR017930Myb domain
SuperFamilySSF466892.38E-2711109IPR009057Homeodomain-like
SMARTSM007171.0E-101364IPR001005SANT/Myb domain
PfamPF002496.6E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-211569IPR009057Homeodomain-like
CDDcd001671.38E-61662No hitNo description
PROSITE profilePS5129424.15963117IPR017930Myb domain
SMARTSM007174.0E-1567115IPR001005SANT/Myb domain
PfamPF002497.0E-1668113IPR001005SANT/Myb domain
CDDcd001679.00E-1070113No hitNo description
Gene3DG3DSA:1.10.10.605.0E-2470118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGRKPCCSKE GLKKGAWTKK EDLLLTEYIK QYGEGTGWRS LPKKAGLLRC GKSCRLRWVN  60
YLKPGLKRGA FTPEEDDLIV RLYNLLGSRW SLIAGRVPGR TDNDIKNYWN TNLLKKLKAQ  120
GKDPSRHKFQ AKQRRRIKEK ANVSSQIIKT NNSENNSSRR KKKEKIDEKY NVDNIAKGPS  180
SNQDGTSSGA STSEVHCSSQ NIEDQSQDEI YEKLQVIDDL LLNDNCLFPH EKCIDFNNNG  240
NHMLLEERWM CGHTRSDKVR NETIREKLEV APVADKMREV RLRWFEHVQR RSTDAPVRKC  300
ERLVLGVAQR GRGRPKKYWG EVIRHDMAEL NLIEDMTLDR KKLRSRIRVV G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A1e-23141172103MYB3
3zqc_D1e-23141172103MYB3
3zqc_G1e-23141172103MYB3
3zqc_J1e-23141172103MYB3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163RRKKKE
2159164RKKKEK
3339345RKKLRSR
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754476e-60HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755206e-60HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084779.11e-127myb-related protein 308-like
SwissprotQ388513e-60MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A3Q7HGY81e-118A0A3Q7HGY8_SOLLC; Uncharacterized protein
STRINGSolyc08g005870.1.11e-118(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-62myb domain protein 6