PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05123.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 464aa    MW: 53182 Da    PI: 6.3325
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05123.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS281.91.9e-86814601373
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++ Ll  A+ ++++++ la + L +l ++ s  gd++qR+aayf+ +L arl+   s  y+ +   +t+    +ee+ a++ f++
  Sme2.5_05123.1_g00001.1  81 LIHSLLISATSIDENSMDLAIENLHELYQNISLVGDSVQRVAAYFADGLIARLLTRKSPFYDMIMKPPTQ----EEEFLAFTEFYK 162
                              57899999***********************************************999999988766665....68889999**** PP

                     GRAS  87 vsPilkfshltaNqaIleavege.....ervHiiDf.disqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetger 164
                              vsP+++f+h+taNqaIlea+e+e       +H++Df dis+G+QWp+L+q+L++ +  ++  sl+iTg g+      +el+et+ r
  Sme2.5_05123.1_g00001.1 163 VSPFYQFAHFTANQAILEAFEKEleynnGLLHVVDFfDISYGFQWPSLIQSLSENAttSNRISLKITGYGK----TIDELRETETR 244
                              **********************998887889****55****************988656677*********....99********* PP

                     GRAS 165 LakfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                              L +fA+ + +++fef+ +    l+ ++l++L  +++E+la+nl++ l +l      + s+++e+Lk v +l + +v++veqe    
  Sme2.5_05123.1_g00001.1 245 LVSFAKGFrNLSFEFQGV----LSGFRLSNLTKRKNETLAINLIFLLNSLS-----TYSKISETLKEVHDLCASIVTIVEQEGCKI 321
                              ******9758*******8....999********************887775.....4444669*******************9999 PP

                     GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplseka 333
                               ++F+ rf+e+l+y++a+fdsl+  lp +s er  +E+  lg+ei+nv+   ++e  +  r ++ e+W+ r+e+ GF  +pls k+
  Sme2.5_05123.1_g00001.1 322 PQTFMPRFMESLHYFAAMFDSLDDCLPIDSIERLRIEKNHLGKEIKNVLNYDHKEgnSSSRYKQIETWKGRMESHGFLGIPLSCKN 407
                              *************************************************98888766899************************** PP

                     GRAS 334 akqaklllrkvksdgyrve.............eesgslvlgWkdrpLvsvSaW 373
                               +qaklll+  +    +++             e+  ++ l W+dr++v++SaW
  Sme2.5_05123.1_g00001.1 408 IMQAKLLLKIRSHSNSTIQldggnggfrvfeiEDPRAISLAWQDRSIVTASAW 460
                              ********9888666777755655555555555566677************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.36855428IPR005202Transcription factor GRAS
PfamPF035146.6E-8481460IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MGDIVDHDEE FLSLRLAIIN DNNKNIKKRK RRELMNFMIN TWDLNESCEG KILSLLELRE  60
IMLKNDVKKK GVVEDGKGLH LIHSLLISAT SIDENSMDLA IENLHELYQN ISLVGDSVQR  120
VAAYFADGLI ARLLTRKSPF YDMIMKPPTQ EEEFLAFTEF YKVSPFYQFA HFTANQAILE  180
AFEKELEYNN GLLHVVDFFD ISYGFQWPSL IQSLSENATT SNRISLKITG YGKTIDELRE  240
TETRLVSFAK GFRNLSFEFQ GVLSGFRLSN LTKRKNETLA INLIFLLNSL STYSKISETL  300
KEVHDLCASI VTIVEQEGCK IPQTFMPRFM ESLHYFAAMF DSLDDCLPID SIERLRIEKN  360
HLGKEIKNVL NYDHKEGNSS SRYKQIETWK GRMESHGFLG IPLSCKNIMQ AKLLLKIRSH  420
SNSTIQLDGG NGGFRVFEIE DPRAISLAWQ DRSIVTASAW HCVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-50644604378Protein SCARECROW
5b3h_A9e-50644603377Protein SCARECROW
5b3h_D9e-50644603377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631KKRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1717340.0AC171734.2 Solanum lycopersicum chromosome 11 clone C11HBa0064J13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571642.10.0PREDICTED: scarecrow-like protein 21
TrEMBLA0A1U8GK510.0A0A1U8GK51_CAPAN; scarecrow-like protein 21
STRINGSolyc11g017100.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123541823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.11e-50SCARECROW-like 21