PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_05099.1_g00002.1 | ||||||||
Common Name | Myb1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 29633.5 Da PI: 6.8966 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++ +++G g W++++++ g++R++k+c++rw++yl Sme2.5_05099.1_g00002.1 15 KGSWTEEEDLLLRKCMEKYGEGKWHLVPARAGLNRCRKSCRLRWLNYL 62 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.8 | 6e-14 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg + +E +l+++++k+lG++ W++Ia +++ gRt++++k++w++ Sme2.5_05099.1_g00002.1 68 RGDFASDEVDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTN 112 6778889***************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 8 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.945 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.27E-28 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.32E-10 | 17 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.825 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-12 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.78E-9 | 74 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MNNPPIICTS VRVRKGSWTE EEDLLLRKCM EKYGEGKWHL VPARAGLNRC RKSCRLRWLN 60 YLRPHIKRGD FASDEVDLIL RLHKLLGNRW SLIAGRLPGR TANDVKNYWN TNLLRKFTIA 120 PQKINNTCKD IISTNEIIRP QPRKYLSSIK KNNLTNNNVI VDKEERCKEI TSDKQTTDAS 180 MDNGDQWWKS LLENFNDDAV EGEEEAVTNY EKTLTSLLHE EISSPPLNGG GNSMQQEQCD 240 NWDDFSADID LWNLLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-24 | 15 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00213 | DAP | Transfer from AT1G66370 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF727476 | 0.0 | KF727476.1 Solanum melongena cultivar Zi Chang anthocyanin R2R3-MYB transcription factor (MYB1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015089442.1 | 1e-128 | transcription factor MYB113-like | ||||
Swissprot | Q9FNV9 | 2e-62 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A140D2R6 | 0.0 | A0A140D2R6_SOLME; Myb transcription factor 1 | ||||
STRING | Solyc10g086260.1.1 | 1e-125 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 7e-65 | myb domain protein 113 |
Publications ? help Back to Top | |||
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