PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_05099.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB_related | ||||||||
Protein Properties | Length: 176aa MW: 20314.5 Da PI: 10.0859 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.1 | 9.7e-09 | 135 | 164 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g+WT+eEd+ll ++ +++G g W++++++ Sme2.5_05099.1_g00001.1 135 KGSWTEEEDLLLRKCMEKYGEGKWHLVPAR 164 799***********************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-11 | 128 | 164 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.67E-8 | 129 | 164 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.845 | 130 | 176 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.7E-7 | 135 | 165 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.14E-5 | 137 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MGLHQGSVLN PFLCVQRSDE IRNDTIWKKL EVAPVADKMR EARLRWFRHV QRKSTDATAR 60 RCERLVLGAT RRGRGRPKEY WGGDFEMRVP RKSSLYFYEV VVTSAYILPS LDPICGIPLR 120 VNNPPIICTS VRVRKGSWTE EEDLLLRKCM EKYGEGKWHL VPARAVVNSD VQVDTS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF727476 | 1e-68 | KF727476.1 Solanum melongena cultivar Zi Chang anthocyanin R2R3-MYB transcription factor (MYB1) mRNA, complete cds. | |||
GenBank | KT259043 | 1e-68 | KT259043.1 Solanum melongena Myb1 mRNA, complete cds. | |||
GenBank | KT727965 | 1e-68 | KT727965.1 Solanum melongena Myb transcription factor 1 (Myb1) gene, complete cds. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66380.1 | 1e-12 | myb domain protein 114 |