PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04891.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SBP
Protein Properties Length: 990aa    MW: 110077 Da    PI: 5.8807
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04891.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.6e-41134211178
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                              +Cqv++C +dls+ak+yhrrhkvCe+hska+ +lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+qa
  Sme2.5_04891.1_g00001.1 134 VCQVDDCGTDLSKAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQA 211
                              6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-32129196IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.086132209IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.28E-38133214IPR004333Transcription factor, SBP-box
PfamPF031107.7E-30135208IPR004333Transcription factor, SBP-box
SuperFamilySSF484034.32E-8761874IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.9E-6763877IPR020683Ankyrin repeat-containing domain
CDDcd002043.50E-7764874No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 990 aa     Download sequence    Send to blast
MGGTDLQGFG KRNLEWDLTD WKWDGDLFIA TPLQQNTSNY QSRQFFPVET GNLASSNSSS  60
SCSEEVNHGM EQQRRELEKR RRVIVVDEDD SGPLSLKLGG QGEPVADAGR ELGNWDGAAG  120
KRTKLSSTAA TRAVCQVDDC GTDLSKAKDY HRRHKVCEMH SKASRALVGN VMQRFCQQCS  180
RFHALQEFDE GKRSCRRRLA GHNKRRRKTQ AESVANNNSL NDGQTSGYSL MSLLKILSNM  240
HSNGANHAED QDLLSNLLRS LASQGPTNGD KTLSGLLQES SNLLNNRSIL RNPEIASLVS  300
NGSQAPPRPK EHQFTNSAAE MPQKRLDVND VRLEDARTAS SQSPGILFPV QSNSQAYTPG  360
RESTTGRSKL MDFDLNDVYV DSDDCGDDID RSPVPECPSW LQQDSHQSSP PQTSGNSDSA  420
SAHSPSSSSG DNQNRTDRIV FKLFGKGPSD FPFVVRAQIL DWLSHSPTEI ESYIRPGCVV  480
LTIYLRLPES AWEELSYDLS SSLSRLLDVP GGDGFWTKGW MYIRVQNQTA FVCDGQVLLD  540
MSLPCVSNDD STLLSVRPIA VPASDRVRFL VKGYNLTKPS TRLLCALEGN YLEPEADNEV  600
EEHVDGADGD DKLQSLNFTC SVPAIVGRGF IEVEDHGVSN SFFPFIIAEE DVCSEIRMLE  660
SDLELTSSDY VKGKTNNIEA RNRALDFIHE LGWLLHRNNL RGRLEHLDPN AVAYPLKRFK  720
WLVEFSVDHE WCAVVKKLLD ILLDGTVGGD DSFLKYALTE MGLLHRAVRR NSRPLVELLL  780
TYNPTKVADE LCSEYQSLVG VSGKFLFRPD CVGPAGLTPL HVAACIDGYE DVLDALTDDP  840
GKVAIEAWKN TRDSTGFTPE DYARLRGHYS YIHLVQRKIS KKATSGHIVV DIPHVPSVVE  900
NNNQKDEVCA TTSLEISMTE RKPIPRPCRL CDRKLAYGSR SRSLLYRPAM FSMVAMAAVC  960
VCVALLLRGS PEVLYIFRPF RWDMVDFGTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-31126208284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17882KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055592.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A0V0IYH60.0A0A0V0IYH6_SOLCH; Putative squamosa promoter-binding-like protein 1-like
STRINGPGSC0003DMT4000133170.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18712466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]