PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04867.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 436aa    MW: 49264.8 Da    PI: 6.9271
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04867.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.31e-14164211148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +g+W+ eEd+ l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
  Sme2.5_04867.1_g00002.1 164 KGPWSCEEDLCLITFIQKHGHKNWRALPKQAGLLRCGKSCRLRWINYL 211
                              79******************************99************97 PP
2Myb_DNA-binding53.74.7e-17217262148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++T++E++ ++++++ +G++ W++Ia++++ gRt++++k+ w+++l
  Sme2.5_04867.1_g00002.1 217 RGNFTPQEEDTIIKLHQSYGNK-WSKIASHLP-GRTDNEIKNVWNTHL 262
                              89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002138.6E-35172IPR000626Ubiquitin domain
PROSITE profilePS5005330.365176IPR000626Ubiquitin domain
CDDcd018032.11E-50176No hitNo description
SuperFamilySSF542363.11E-33176IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.904.0E-49179No hitNo description
PfamPF002407.4E-33374IPR000626Ubiquitin domain
PRINTSPR003481.6E-371131IPR019956Ubiquitin
PROSITE patternPS0029902752IPR019954Ubiquitin conserved site
PRINTSPR003481.6E-373252IPR019956Ubiquitin
PRINTSPR003481.6E-375374IPR019956Ubiquitin
SMARTSM002131.2E-2777148IPR000626Ubiquitin domain
PROSITE profilePS5005326.59877152IPR000626Ubiquitin domain
CDDcd018061.52E-4578152No hitNo description
SuperFamilySSF542363.52E-2779153IPR029071Ubiquitin-related domain
PfamPF002403.2E-2779150IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.901.0E-3580152No hitNo description
PROSITE patternPS002990103128IPR019954Ubiquitin conserved site
Gene3DG3DSA:1.10.10.603.1E-23155214IPR009057Homeodomain-like
PROSITE profilePS5129415.149159211IPR017930Myb domain
SuperFamilySSF466894.87E-30162258IPR009057Homeodomain-like
SMARTSM007171.3E-11163213IPR001005SANT/Myb domain
PfamPF002498.2E-14164211IPR001005SANT/Myb domain
CDDcd001671.28E-8166211No hitNo description
PROSITE profilePS5129425.858212266IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-28215266IPR009057Homeodomain-like
SMARTSM007175.9E-16216264IPR001005SANT/Myb domain
PfamPF002494.4E-16217262IPR001005SANT/Myb domain
CDDcd001677.60E-11219262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009693Biological Processethylene biosynthetic process
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005829Cellular Componentcytosol
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MQIFVKTLTG KTITLEVESS DTIDNVKTKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN  60
IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID RIKERVEEKE GIPPVQQRLI  120
YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGRAPCCDKS KVKKGPWSCE EDLCLITFIQ  180
KHGHKNWRAL PKQAGLLRCG KSCRLRWINY LRPDVKRGNF TPQEEDTIIK LHQSYGNKWS  240
KIASHLPGRT DNEIKNVWNT HLKKRLMKTL HSEAKLDGSC ANSPSSSSST SVVLSHAYTI  300
NDRESKNEKA NMIIEKEETT KSCSPTSSYA SNLSQIHEIS SPNNVDMDWI FQFNEEPFSS  360
TTTRKAHDGV IEIPLECDDV DIWDKLDVPC ASPPPPNSND HSKQDNEASS QLICQGLSEF  420
ECQKWFKYFE NELLGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zqs_A3e-7911524157ubiquitin
4zqs_B3e-7911524157ubiquitin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016579575.11e-140PREDICTED: myb-related protein 308-like
TrEMBLA0A2G3C3B61e-140A0A2G3C3B6_CAPCH; Myb-related protein Zm1
STRINGXP_009612238.11e-119(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.12e-74myb domain protein 58