PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_04829.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HSF | ||||||||
Protein Properties | Length: 352aa MW: 39421.2 Da PI: 6.5177 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 99.7 | 2.7e-31 | 1 | 86 | 9 | 103 |
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 +++d++++ li w + +nsf+v+++ ef++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+++ll Sme2.5_04829.1_g00004.1 1 MVNDPKIDGLIAWGTANNSFIVVEPLEFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQTHLL 77 89********************************************************999.........**************** PP XXXXXXXXX CS HSF_DNA-bind 95 ekikrkkse 103 ++i rkk++ Sme2.5_04829.1_g00004.1 78 KNIVRKKHS 86 ******976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00447 | 4.1E-26 | 1 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.03E-29 | 1 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.4E-31 | 1 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.0E-39 | 1 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.8E-10 | 32 | 44 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 33 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.8E-10 | 45 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MVNDPKIDGL IAWGTANNSF IVVEPLEFSQ RILPVYFKHN NFSSFVRQLN TYGFRKVDPD 60 KWEFANEWFL RGQTHLLKNI VRKKHSRNSC SQKQDESEDE EILTEISRLK QEQKALEHEV 120 ENMTRRLEAT EKRPQQMMAF LCKVVDDPEI LPRILMEKER SKRLSLTNRE KKRRLMISNS 180 TSCSSVKSED AVRATSSFYS PDANFDKDTF CQSSPSSETP PAPAWLGNRP MISYEPCTTT 240 IQSIRSPDAN FDKDTFCHSS PSSETLSTAW MSQKKAVIGS RPMMMTTNEA YGSCPTMSSS 300 LSTGSSESGG FTAPPMDNFH GYDYGGGGGG GAVATEEASP PPYPFSLFGG GF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdg_A | 3e-22 | 1 | 83 | 17 | 110 | Heat shock factor protein 1 |
5hdn_A | 3e-22 | 1 | 83 | 17 | 110 | Heat shock factor protein 1 |
5hdn_B | 3e-22 | 1 | 83 | 17 | 110 | Heat shock factor protein 1 |
5hdn_C | 3e-22 | 1 | 83 | 17 | 110 | Heat shock factor protein 1 |
5hdn_D | 3e-22 | 1 | 83 | 17 | 110 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00379 | DAP | Transfer from AT3G24520 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006353456.1 | 0.0 | PREDICTED: heat stress transcription factor C-1 | ||||
Refseq | XP_015059451.1 | 0.0 | heat stress transcription factor C-1 isoform X1 | ||||
Swissprot | Q9LV52 | 5e-82 | HSFC1_ARATH; Heat stress transcription factor C-1 | ||||
TrEMBL | M0ZHR4 | 0.0 | M0ZHR4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400001025 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6832 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 6e-84 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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