PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04796.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 430aa    MW: 47767.4 Da    PI: 5.0928
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04796.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.13e-113694273374
                     GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                               lLl+cAe+v+ ++l +a +lL ++ el+sp g++ +R+aayf+eAL+ar+ +s  + y+ ++ ++ + ++s++ ++al+ ++ +s
  Sme2.5_04796.1_g00003.1  69 GLLLQCAECVAMENLDEAAHLLPEIAELSSPFGSSAERVAAYFAEALSARIISSHLRFYSPFHLKALTLTHSQKLFTALQSYNTIS 154
                              58************************************************************************************ PP

                     GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                              P++kfsh taNqaI++a+e e++vHiiD+di+qGlQWp L+q L+sR+++  s++iTgvgs    s e le+tg+rL++fA+++g+
  Sme2.5_04796.1_g00003.1 155 PLIKFSHYTANQAIYQALEDEDHVHIIDLDIMQGLQWPGLFQILSSRSRKLCSIKITGVGS----SMELLESTGRRLTEFANSFGL 236
                              *************************************************************....********************* PP

                     GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                              pfef++l  k  +  e+++L vk gE+ +Vn+++  h l+d ++s       +L+l+  l+Pk++++veq+++  +++Fl rf+ea
  Sme2.5_04796.1_g00003.1 237 PFEFQPLEGKIGHITEVDQLGVKIGETRVVNWMH--HCLYDITGSDMG----TLRLLSLLRPKLITMVEQDLSQ-GGKFLGRFVEA 315
                              ******988899999******************9..777766777777....********************98.789******** PP

                     GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                              l+yysalfd+l  +l++es er++vE++l+g ei+n+va  g +r+ +   + +W + l++ GF pv+ls +aa+qa+lll +++ 
  Sme2.5_04796.1_g00003.1 316 LHYYSALFDALGDGLSEESAERHTVEQQLFGSEIRNIVAVGGPKRTGEVP-VDRWGDELKRIGFFPVSLSGTAAAQASLLLGMFP- 399
                              ********************************************887765.9*********************************. PP

                     GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +gy++ ee+g+l lgWkd  L+++SaW+
  Sme2.5_04796.1_g00003.1 400 RGYTLVEENGCLKLGWKDLCLLTASAWQ 427
                              ***************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.40241408IPR005202Transcription factor GRAS
PfamPF035141.0E-11069427IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MQQFSFVSAT PINHTSSSMS SKRSIVEFTP ASDEDPLLTK RPRNEREEEE EEEAVVLVDA  60
DSIGLRLLGL LLQCAECVAM ENLDEAAHLL PEIAELSSPF GSSAERVAAY FAEALSARII  120
SSHLRFYSPF HLKALTLTHS QKLFTALQSY NTISPLIKFS HYTANQAIYQ ALEDEDHVHI  180
IDLDIMQGLQ WPGLFQILSS RSRKLCSIKI TGVGSSMELL ESTGRRLTEF ANSFGLPFEF  240
QPLEGKIGHI TEVDQLGVKI GETRVVNWMH HCLYDITGSD MGTLRLLSLL RPKLITMVEQ  300
DLSQGGKFLG RFVEALHYYS ALFDALGDGL SEESAERHTV EQQLFGSEIR NIVAVGGPKR  360
TGEVPVDRWG DELKRIGFFP VSLSGTAAAQ ASLLLGMFPR GYTLVEENGC LKLGWKDLCL  420
LTASAWQPYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1547342824379Protein SCARECROW
5b3h_D1e-1547342824379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083043.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-166SCL23_ARATH; Scarecrow-like protein 23
TrEMBLM1AUK90.0M1AUK9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000306520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107452126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-158GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]