PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_04775.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GATA | ||||||||
Protein Properties | Length: 182aa MW: 19657.5 Da PI: 10.7044 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.3 | 4.8e-19 | 18 | 52 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ CgttkTplWR gp g+k+LCnaCG++ rkk++ Sme2.5_04775.1_g00008.1 18 CADCGTTKTPLWRGGPAGPKSLCNACGIKSRKKRR 52 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.3E-14 | 12 | 62 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.492 | 12 | 48 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.9E-12 | 13 | 52 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.2E-15 | 17 | 51 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.48E-11 | 17 | 52 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 18 | 43 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.3E-17 | 18 | 52 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MSSEATSPET SQSNVKTCAD CGTTKTPLWR GGPAGPKSLC NACGIKSRKK RRAFLGLNNE 60 DKKSKKSAAL GHKSTGLQNH LNQSCSSSSN SEDSKNSNFV KNIVSSSLKK KLLPFGKEVV 120 LQRPRSRSTQ KKKLGEVEQA AFLLMALSCG SFYTQTGMKM GKDRKNEKCC TLGSKSSTLW 180 VG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-136 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006345972.1 | 1e-104 | PREDICTED: GATA transcription factor 15-like isoform X1 | ||||
Refseq | XP_006345973.1 | 1e-104 | PREDICTED: GATA transcription factor 15-like isoform X2 | ||||
Refseq | XP_006345974.1 | 1e-104 | PREDICTED: GATA transcription factor 17-like isoform X3 | ||||
Refseq | XP_006345975.1 | 1e-104 | PREDICTED: GATA transcription factor 17-like isoform X4 | ||||
TrEMBL | A0A0V0HK93 | 1e-105 | A0A0V0HK93_SOLCH; Putative GATA transcription factor 17-like | ||||
STRING | PGSC0003DMT400060241 | 1e-103 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1999 | 23 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 1e-33 | GATA transcription factor 15 |