PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_04757.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Whirly

Protein Properties

Length: 1066aa MW: 119567 Da PI: 7.6929

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_04757.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	194.5	1.5e-60	575	713	1	139
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsn 86 sv+k+kaal+ ++++ptf+ ldsg +klk++G ++l++ ++++ rkydWek+q falsatev++l+ +++++s+effhdp++++sn Sme2.5_04757.1_g00003.1 575 SVFKGKAALSAEPRLPTFSRLDSGGVKLKHRGVIMLTFWPSVGDRKYDWEKRQLFALSATEVGSLIIMGTRDSSEFFHDPSMQSSN 660 79********************************************************************************** PP Whirly 87 eGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 +G+vrk+l+++P +dGsG+fv+lsv n+ +k+n++f+vPv+ aefav+r++++ Sme2.5_04757.1_g00003.1 661 AGQVRKSLSIKPNADGSGYFVSLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFS 713 ************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.30.31.10	6.1E-62	563	713	IPR009044	ssDNA-binding transcriptional regulator
SuperFamily	SSF54447	9.42E-53	568	715	IPR009044	ssDNA-binding transcriptional regulator
Pfam	PF08536	1.2E-56	576	710	IPR013742	Plant transcription factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006281	Biological Process	DNA repair
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005739	Cellular Component	mitochondrion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1066 aa Download sequence Send to blast
MTDHSDNAGL TEITVTDLTT TQQSELIAQL TQQIAEMKRT QEPTNLAITA NLPRPDHERP 60 PIHFSSPDPS DQPAPISTNP PMVPIQAPPI INLTTLDAGP SHIFSQNTHD VQGGSTSHIA 120 HIIQPGIQAP DKYNLPSTQR MPKIPLHIPI LTNPYIPYST YPEIGHYKGK EKEWKAKEGT 180 TKLDIREEIT KVMKQFRHTP DIARLSYEDL CIHPDLNLPE GFKVPKFNTF DRSGNPLAHL 240 RAYCDQMVGV GRNKALLMRL FSRSLSREAL EWFAYNVEIM PDRYSLEKIK QKSIESYREY 300 AHRWRKNAAR VRPPISENKI IEVFVRFQEP EFYERMILLV GVKFTDIVKV DKKTPRVFTP 360 LAESRTKLFE RLSAAGLIQP IPPKAMKANS HFLRDDQICA YHSNSIGHNT KNCINLKHKI 420 QDLIDCDMVV LRTVDPNINE NPLLDHGENM TEVHPRKEEN EEGRVKNQQV LARFYDNVET 480 HSDSAPQVLY LNPAPSYDEN GERFSLEPCL NPSCSFSFSF TCITVNQLHK ELPGESFKGS 540 IWQHAINTFA GFSAVRQNVA VDAGKLEGRV FAPFSVFKGK AALSAEPRLP TFSRLDSGGV 600 KLKHRGVIML TFWPSVGDRK YDWEKRQLFA LSATEVGSLI IMGTRDSSEF FHDPSMQSSN 660 AGQVRKSLSI KPNADGSGYF VSLSVVNNNL KTNDRFTVPV TTAEFAVMRT AFSLVQGCGH 720 SGFPLIVEAK REKSTPAKPR VKIRILNVLL GLMLLDILYA ASFGSLKMRD GSFSASTEEH 780 LRSQRHIFWS SLRSRSNNSL IPVLLCVCKF TAAFAELWGE ITCQEFAEVS SVQEFVVILE 840 TSLSISESVE LAHPTPTLRD IHQAMRGSTR GGCGIVRGGA RGSPQASGGR RVCYVIPDRV 900 EAEASNAIIT SMVSVCRHST SVLFDLGSMY SYVSAYFAFN IDIMCELLVE PICVSTLLVW 960 TRAPSSYPKG VISYIHACRL MEKGCLAYLA HVQACSQEPP SLETTRVARE FMDVFLTDLP 1020 GVPLDRDIDF AIDVELNTKP ISIVPNRMAL AELKELKEQW EDLFKK

Sequence ? help Back to Top

Protein Sequence Length: 1066 aa Download sequence Send to blast

MTDHSDNAGL TEITVTDLTT TQQSELIAQL TQQIAEMKRT QEPTNLAITA NLPRPDHERP  60
PIHFSSPDPS DQPAPISTNP PMVPIQAPPI INLTTLDAGP SHIFSQNTHD VQGGSTSHIA  120
HIIQPGIQAP DKYNLPSTQR MPKIPLHIPI LTNPYIPYST YPEIGHYKGK EKEWKAKEGT  180
TKLDIREEIT KVMKQFRHTP DIARLSYEDL CIHPDLNLPE GFKVPKFNTF DRSGNPLAHL  240
RAYCDQMVGV GRNKALLMRL FSRSLSREAL EWFAYNVEIM PDRYSLEKIK QKSIESYREY  300
AHRWRKNAAR VRPPISENKI IEVFVRFQEP EFYERMILLV GVKFTDIVKV DKKTPRVFTP  360
LAESRTKLFE RLSAAGLIQP IPPKAMKANS HFLRDDQICA YHSNSIGHNT KNCINLKHKI  420
QDLIDCDMVV LRTVDPNINE NPLLDHGENM TEVHPRKEEN EEGRVKNQQV LARFYDNVET  480
HSDSAPQVLY LNPAPSYDEN GERFSLEPCL NPSCSFSFSF TCITVNQLHK ELPGESFKGS  540
IWQHAINTFA GFSAVRQNVA VDAGKLEGRV FAPFSVFKGK AALSAEPRLP TFSRLDSGGV  600
KLKHRGVIML TFWPSVGDRK YDWEKRQLFA LSATEVGSLI IMGTRDSSEF FHDPSMQSSN  660
AGQVRKSLSI KPNADGSGYF VSLSVVNNNL KTNDRFTVPV TTAEFAVMRT AFSLVQGCGH  720
SGFPLIVEAK REKSTPAKPR VKIRILNVLL GLMLLDILYA ASFGSLKMRD GSFSASTEEH  780
LRSQRHIFWS SLRSRSNNSL IPVLLCVCKF TAAFAELWGE ITCQEFAEVS SVQEFVVILE  840
TSLSISESVE LAHPTPTLRD IHQAMRGSTR GGCGIVRGGA RGSPQASGGR RVCYVIPDRV  900
EAEASNAIIT SMVSVCRHST SVLFDLGSMY SYVSAYFAFN IDIMCELLVE PICVSTLLVW  960
TRAPSSYPKG VISYIHACRL MEKGCLAYLA HVQACSQEPP SLETTRVARE FMDVFLTDLP  1020
GVPLDRDIDF AIDVELNTKP ISIVPNRMAL AELKELKEQW EDLFKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3n1h_A	1e-92	561	715	2	156	StWhy2
3n1i_A	1e-92	561	715	2	156	protein StWhy2
3n1j_A	1e-92	561	715	2	156	Protein StWhy2
3n1k_A	1e-92	561	715	2	156	protein StWhy2
3n1l_A	1e-92	561	715	2	156	protein StWhy2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM234504	0.0	HM234504.1 Solanum tuberosum Why2 protein mRNA, complete cds.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	4e-72	WHIRLY 2