PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_04736.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 199aa MW: 21805.4 Da PI: 4.7274 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.4 | 1.3e-16 | 33 | 83 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G r++k++g+Wv+eIr+p+ + r++lg+f t+e+Aa a++ a+ +l+g Sme2.5_04736.1_g00007.1 33 IYRGTRRRKSSGKWVSEIREPR----StNRIWLGTFPTPEMAAVAYDVAAIALKG 83 69******************84....259**********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-10 | 32 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.04E-27 | 32 | 93 | No hit | No description |
PROSITE profile | PS51032 | 22.062 | 33 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-27 | 33 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-32 | 33 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-19 | 33 | 92 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MATYGGKDNI IGGSNDSDTT VPDNKNYSGR HPIYRGTRRR KSSGKWVSEI REPRSTNRIW 60 LGTFPTPEMA AVAYDVAAIA LKGPDADLNF PNLASSLPVP ATRSARDIQT AASGAATVVG 120 AAGDALLAVA CREGVVSERG KMENLEIQNY EFMDEDLIFD MPNVLVNMAE GMLISPPRFY 180 MHDDDDHTTI AYQNLWNYT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 36 | 41 | TRRRKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015086838.1 | 1e-107 | ethylene-responsive transcription factor ERF024-like | ||||
Swissprot | Q9SJR0 | 2e-52 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A3Q7HZ49 | 1e-104 | A0A3Q7HZ49_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g009240.1.1 | 1e-105 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 6e-44 | ERF family protein |