PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04736.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 524aa    MW: 60311.9 Da    PI: 7.1151
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04736.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.62e-29103188187
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                              rW++qe+l+L+e+r+ ++++++++++k+plW+evs+ m +e+g++r+ k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+ql
  Sme2.5_04736.1_g00006.1 103 RWPRQETLTLLEIRSGLDSKFKEANQKGPLWDEVSRIMsEEHGYQRTGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQL 186
                              8*************************************999*****************************98..55667******* PP

                 trihelix  86 ea 87 
                              ea
  Sme2.5_04736.1_g00006.1 187 EA 188
                              85 PP
2trihelix54.33.6e-17374462173
                 trihelix   1 rWtkqevlaLiearremeerlrr....gk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                              +W+++e+  Li++r++me r+++    ++             +  lWee+s km+  g+ +s+++Ck+kw+++n +  k+++ +k+
  Sme2.5_04736.1_g00006.1 374 KWPDSEITRLIQLRTSMEPRFQQligiSSsrddhdhdddhdDDHVLWEEISTKMAILGYDKSATMCKKKWSSINSYLIKCNKKRKD 459
                              7*********************744331145667777777799***************************************9998 PP

                 trihelix  71 rts 73 
                              ++s
  Sme2.5_04736.1_g00006.1 460 QNS 462
                              633 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.9100163IPR001005SANT/Myb domain
PfamPF138371.9E-20102189No hitNo description
CDDcd122033.98E-20103168No hitNo description
PROSITE profilePS500906.562103161IPR017877Myb-like domain
SMARTSM007170.17371449IPR001005SANT/Myb domain
PfamPF138374.0E-11373463No hitNo description
CDDcd122031.02E-16373449No hitNo description
PROSITE profilePS500905.366374447IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MNGGRPIFGS IQQVPPEFLP VTSNQQHQRR NLGSDHHQYD MVMDLTQVPP SGLPTPHHHQ  60
HHHQHQQHEF LTDSSPVAAT TSAGFSGMDQ MEACGGGGDG SARWPRQETL TLLEIRSGLD  120
SKFKEANQKG PLWDEVSRIM SEEHGYQRTG KKCREKFENL YKYYKKTKEG KAGRQDGKHY  180
RFFRQLEALY GETSNNTISS ASASEAHHQG SHFPYNSVNN INQDPHNFHQ HQGPKLSDSM  240
SLSNSCEFKM TSSEDSDEDK MSRKRRGKRS LKAKIKDFID GQMRKLMEKQ EAWLEKMMKM  300
IEHKEQERIL REEEWRNQET IRMEREHKFW ANERAWIEAR DAALLEAVHK LSGKDLKSTS  360
SNNPRNLDEE MVEKWPDSEI TRLIQLRTSM EPRFQQLIGI SSSRDDHDHD DDHDDDHVLW  420
EEISTKMAIL GYDKSATMCK KKWSSINSYL IKCNKKRKDQ NSTSLLCYNS NLQINNQYYE  480
ADGSSCFRYL MGDHQQQNLW DNYELKLSKG GGGGGGGGDG GSNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1439457KKKWSSINSYLIKCNKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341153.10.0PREDICTED: trihelix transcription factor PTL-like
SwissprotQ9LZS01e-114PTL_ARATH; Trihelix transcription factor PTL
TrEMBLM0ZSB10.0M0ZSB1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000070160.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30632451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-111Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]