PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04615.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 384aa    MW: 42535.1 Da    PI: 4.3729
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04615.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-2081131155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                              ++y+GVr++  +g+WvAeIr+p     +   r +lg+f+ta eAa a+++a+++++g
  Sme2.5_04615.1_g00005.1  81 CKYRGVRQRT-WGKWVAEIREP-----HrgSRLWLGTFDTAIEAALAYDEAARAMYG 131
                              79*****999.**********6.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-1481131IPR001471AP2/ERF domain
CDDcd000181.24E-3181140No hitNo description
Gene3DG3DSA:3.30.730.103.8E-3182140IPR001471AP2/ERF domain
PROSITE profilePS5103221.35182139IPR001471AP2/ERF domain
SMARTSM003809.1E-3582145IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-2182140IPR016177DNA-binding domain
PRINTSPR003675.1E-108394IPR001471AP2/ERF domain
PRINTSPR003675.1E-10105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAVLDQTSNM MLPMDYTRKK KSRSRKDAPK NVAKTLARWK EVNEKLDSCD NDGRKPVRKV  60
PAKGSKKGCM KGKGGPLNGQ CKYRGVRQRT WGKWVAEIRE PHRGSRLWLG TFDTAIEAAL  120
AYDEAARAMY GPCARLNLPD CCTSSKESSK DDSSLPTVSQ SDSNTAVSSS SEVYPADGLM  180
SGRTNIREIR CEDGESETKI DGSMSCSNGV GTPLSSLRDE AQDEAKGLLD KGDIFEIKEE  240
PVANNDTSWD DGKHDLENLC LDDEMFDVTE LLGMIDSTPL DASARNQDAG SVLPKQDQYA  300
CDPLYQLQNA AYDDNLSSNP SYELENALDK FTNPSNQLEN ADGNTLEGLQ QMEPVDYDFD  360
FDFLKPGRQE DFNFCLDDLG VLDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1783139360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355639.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
RefseqXP_015167944.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLM1CL100.0M1CL10_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000697330.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.15e-35DRE-binding protein 2A