PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04517.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 1046aa    MW: 116540 Da    PI: 6.7179
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04517.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.4e-3195151258
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                              dDgy+WrKYGqK++k+s+fprsYY+Ct ++C +kk+ve+s+++p++++itYeg H h
  Sme2.5_04517.1_g00003.1  95 DDGYKWRKYGQKSIKNSPFPRSYYKCTNPRCGAKKQVEKSSDEPNTFIITYEGLHLH 151
                              8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
HamapMF_0145832.924231019IPR005936Peptidase, FtsH
PROSITE profilePS5081126.46389151IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-2890151IPR003657WRKY domain
SuperFamilySSF1182901.09E-2591151IPR003657WRKY domain
SMARTSM007745.1E-3694153IPR003657WRKY domain
PfamPF031065.9E-2595151IPR003657WRKY domain
PfamPF064801.7E-8391484IPR011546Peptidase M41, FtsH extracellular
TIGRFAMsTIGR012412.3E-202496995IPR005936Peptidase, FtsH
SuperFamilySSF525407.38E-68555802IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.2E-59555737IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM003822.1E-20591731IPR003593AAA+ ATPase domain
CDDcd000098.18E-26592729No hitNo description
PfamPF000045.7E-41596728IPR003959ATPase, AAA-type, core
PROSITE patternPS006740699717IPR003960ATPase, AAA-type, conserved site
Gene3DG3DSA:1.10.8.604.7E-23738805No hitNo description
PfamPF014341.1E-74791993IPR000642Peptidase M41
SuperFamilySSF1409901.57E-628121003No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0005739Cellular Componentmitochondrion
GO:0009535Cellular Componentchloroplast thylakoid membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1046 aa     Download sequence    Send to blast
MLMEKYSWSY EDELIKELLD DESPFFLAPQ HDSTSSKSSI SSHDDIESGL SITSNGVLQS  60
HDARNLGLDM MMSKQEAHEA KYTLRIKTCG NAMADDGYKW RKYGQKSIKN SPFPRSYYKC  120
TNPRCGAKKQ VEKSSDEPNT FIITYEGLHL HFTYPFITLD PSQLLDQPNK KPKLTHSKAQ  180
NTSEVDESPK FVNPGPLGFG EMGSQELDFG GMGSQGLLED MVPLMGVGYG VRSAVVDEVA  240
ARGACITRVD GGLGFARTYL TLIGGGRQGL SKAYLSELDS VFASPKLRRF FCSQGPKRRN  300
YENYYPKNKK EIPKANNNQK AESGKEEGSS EQGNPQENFI KLNYNLITPL SFIGFILSSI  360
LMSPREQQES RVYNTCQNKY RFYYPIDDNF RHEISFQEFK NKLLEPGLVD RIVVTNKSVA  420
KVYVRSSAPS PDQIGDDTVQ VPVTGRNDRR NTSQYKYYFN IGSVESFEEK LEEAQEALRI  480
DPHNYVPVTY VDELNWFQEV MRFGPTVLLL AVLYFMGRRV QGGMGVGGPG GKGGRGIFNI  540
GKAHFTKMDK NAKNKVFFKD VAGCDEAKQE IMEFVHFLKN PKKYEQLGAK IPKGALLVGP  600
PGTGKTLLAK ATAGESGVPF LSISGSDFME MFVGVGPARV RSLFQEARQC APSIIFIDEI  660
DAIGRARGRG GFSGGHDERE STLNQLLVEM DGFATTSGVV ILAGTNRPDI LDKALLRPGR  720
FDRQITIDKP DIKGRDQIFL IYLNKLKLDH EASFYSQRLA ALTPGFAGAD IANVCNEAAL  780
IAARNESTII TMQHFEAAID RVIGGLEKKN KVISKLERRT VAYHESGHAV AGWFLEHAEP  840
LLKVTIVPRG TAALGFAQYV PNENLLMTKE QLFDVTCMTL GGRAAEQVLI GKISTGAQND  900
LEKVTKMTYA QVAVYGFSDK VGLLSFPQRD DGFEMSKPYS SKTAAIIDNE VREWVSKAYG  960
RTVQLIEEHK EHVAQIAELL LEKEVLHQED LVRVLGERPF KSHEPTNYDI FKQGFEEENK  1020
ETKDNPENKT VEDNGSPPVV PEVVPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6nyy_A0.0528102211502AFG3-like protein 2
6nyy_B0.0528102211502AFG3-like protein 2
6nyy_C0.0528102211502AFG3-like protein 2
6nyy_D0.0528102211502AFG3-like protein 2
6nyy_E0.0528102211502AFG3-like protein 2
6nyy_F0.0528102211502AFG3-like protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable ATP-dependent zinc metallopeptidase. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX8397450.0JX839745.1 Solanum tuberosum clone StDT11 putative AAA-metalloprotease FtsH mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341014.10.0PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial
SwissprotQ0DHL40.0FTSH8_ORYSJ; ATP-dependent zinc metalloprotease FTSH 8, mitochondrial
TrEMBLA0A3Q7I0110.0A0A3Q7I011_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000227570.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA225123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.13e-39WRKY DNA-binding protein 49
Publications ? help Back to Top
  1. Yu F,Park S,Rodermel SR
    Functional redundancy of AtFtsH metalloproteases in thylakoid membrane complexes.
    Plant Physiol., 2005. 138(4): p. 1957-66
    [PMID:16040665]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]