PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_04516.1_g00005.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

WRKY

Protein Properties

Length: 301aa MW: 33877.8 Da PI: 6.9425

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_04516.1_g00005.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.5	1.2e-32	164	222	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+++fprsYYrCt++ C vkk+vers +dp++v++tYeg+H+h+ Sme2.5_04516.1_g00005.1 164 LDDGFRWRKYGQKAVKNAPFPRSYYRCTTTLCGVKKRVERSIQDPSIVITTYEGTHTHS 222 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-33	149	224	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-28	156	224	IPR003657	WRKY domain
PROSITE profile	PS50811	29.941	159	224	IPR003657	WRKY domain
SMART	SM00774	1.9E-38	164	223	IPR003657	WRKY domain
Pfam	PF03106	2.6E-26	165	221	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MEKENNVKRE MITPIGNGNG NGNEDENSST FLMNNPSFDI EKDYSLGFLL ETMFGTIDDY 60 TTSTTTSSIF DLLMMPLPPH HHQPPTPPAP SPSPREIITC SSVVPESSTI SSPSIELVAD 120 DYKKDGEQDH EDKYNKKLKP NKKQQKGKRE PRFAFMTKSE VDHLDDGFRW RKYGQKAVKN 180 APFPRSYYRC TTTLCGVKKR VERSIQDPSI VITTYEGTHT HSCPMTPRGY IGVQAVTTTY 240 GGARVGCGDS GGRTYNYGDS SYNSLQERRF WNSSNSSLAK DDHGLLQDMV SSRMKRDLIE 300 E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-27	154	225	7	78	Probable WRKY transcription factor 4
2lex_A	1e-27	154	225	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	1e-51	HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBank	HG975517	1e-51	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006355755.1	1e-106	PREDICTED: probable WRKY transcription factor 48 isoform X2
Swissprot	Q9FGZ4	2e-44	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A2G2WTU2	1e-116	A0A2G2WTU2_CAPBA; Putative WRKY transcription factor 23
STRING	Solyc05g053380.2.1	1e-105	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	4e-47	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]