PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04475.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 203aa    MW: 23034.8 Da    PI: 8.4141
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04475.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.6e-19108158255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp     k +r +lg++ t+e+Aa a+++a+ k++g
  Sme2.5_04475.1_g00003.1 108 RYRGVRRRP-WGKFAAEIRDP---DrKGARLWLGTYETPEDAALAYDQAAYKIRG 158
                              7********.**********8...3245*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-36108172IPR001471AP2/ERF domain
PfamPF008479.8E-14108158IPR001471AP2/ERF domain
CDDcd000187.10E-31108168No hitNo description
PROSITE profilePS5103224.355108166IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-23108167IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-32108167IPR001471AP2/ERF domain
PRINTSPR003672.4E-13109120IPR001471AP2/ERF domain
PRINTSPR003672.4E-13148168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MYQQTTTTIS NDDLSMLENI KFHLVNDFDF SQILSMFDPI NISNAEIINS PISSYDSSPS  60
AAEISWGDIV TSNIYSPWQY VDKLGHEEVA KEEPIVARGV HAPGDWNRYR GVRRRPWGKF  120
AAEIRDPDRK GARLWLGTYE TPEDAALAYD QAAYKIRGSK ARLNFPHLIG SDISQPVRVA  180
PRRRCRSSES SLVENTSSKK RKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-28109171668ATERF1
3gcc_A9e-28109171668ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181201RRRCRSSESSLVENTSSKKRK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088985.11e-126ethylene-responsive transcription factor 13-like
SwissprotQ8L9K13e-41ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLM1CGJ81e-117M1CGJ8_SOLTU; Uncharacterized protein
STRINGSolyc01g090300.2.11e-126(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.17e-42ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]