PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04366.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 261aa    MW: 28334.3 Da    PI: 9.5225
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04366.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.24.2e-391473362
                   zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                             e  lkcprCds+ntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++
  Sme2.5_04366.1_g00001.1 14 EPGLKCPRCDSSNTKFCYFNNYSLSQPRHFCKNCRRYWTRGGALRNVPVGGGCRRNKRNK 73
                             56789****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-29162IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.8511771IPR003851Zinc finger, Dof-type
PfamPF027011.6E-321771IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101955IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MVDRARMAKI PLPEPGLKCP RCDSSNTKFC YFNNYSLSQP RHFCKNCRRY WTRGGALRNV  60
PVGGGCRRNK RNKSNNNNSK SGGGGQIGNS NNASTSAIPS SSCSMEMIGP HFSQASTQFT  120
PLMAAFQNLN NYGGLIHPPP THQLVGEMGF QIGSNNLLPS LVGSNFEHPT NLYSNFQGDQ  180
GTTTSTTIEA SNGITQQVKM EDNIGTNRQG NMNSSTKQFL GTLENNNQYW GVANANANAN  240
SWIGFSGDIN NNSPSTTNHL L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348997.21e-131PREDICTED: dof zinc finger protein DOF5.1-like
TrEMBLM0ZI131e-131M0ZI13_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000011741e-131(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.12e-36OBF-binding protein 3