PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04312.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 340aa    MW: 38481.1 Da    PI: 6.1101
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04312.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind87.51.7e-27401302101
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl k+ye++ed+e++ l++w++++++f+++d+++f  +vLpkyFkhsn++SF+ QLn Y F+kv + +          e+ +++F+
  Sme2.5_04312.1_g00005.1  40 FLVKTYEMVEDPETDPLVHWTSSKTTFLITDPNKFCIEVLPKYFKHSNLSSFIYQLNNYRFRKVCSYK---------CEYGNPWFR 116
                              9****************************************************************999.........67******* PP

                              XXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkk 101
                              +gkk+ l++ik + 
  Sme2.5_04312.1_g00005.1 117 AGKKHWLKNIKSRI 130
                              ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-2934124IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.54E-2935128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-3736129IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.0E-2540128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-154063IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-157890IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-1591103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEINNEENGG KGGGRRRGGG GVGRGRPRLT GLRGNSPPPF LVKTYEMVED PETDPLVHWT  60
SSKTTFLITD PNKFCIEVLP KYFKHSNLSS FIYQLNNYRF RKVCSYKCEY GNPWFRAGKK  120
HWLKNIKSRI QLSKENNPQQ VSHSPRVDLV NDNLEEELEK LRNDHISLKV ELQKLKDGQE  180
NLTSFFPNLV GCGKETDIRN IFKLLLEKSQ VRGDSSSNDT RKRPCLVESP DRMAGSVQDG  240
IGQISNSAGG SVSSNEKQKE ETTAQNAKNR EFWEKLFEDD SESKNEGAEE LEQELSRSRA  300
MAEIEEMVES KIAMEGEALI AKAAAASLDE EKEAYLQLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2191301130Heat shock factor protein 1
5d5v_B2e-2191301130Heat shock factor protein 1
5d5v_D2e-2191301130Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11220GGRRRGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169233.10.0PREDICTED: heat stress transcription factor A-7a-like
TrEMBLM1CRG30.0M1CRG3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000730650.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129701518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-35heat shock transcription factor A2