PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04194.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26859.3 Da    PI: 9.7253
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04194.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.41.4e-312574150
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Sme2.5_04194.1_g00003.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74
                             79***********************************************8 PP
2K-box98.31.1e-3292185396
                    K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                              +s++ s++ea+a+++qqe++kL+++i nLq+++R++lGe L+ L+lk+L++Leq++e++++kiRskKnell+++ie++qk+  e++
  Sme2.5_04194.1_g00003.1  92 SSNTGSVSEANAQYYQQEASKLRAQIGNLQNQNRNMLGEALGGLQLKDLKNLEQRIERGISKIRSKKNELLFAEIEYMQKRIAETE 177
                              3445559******************************************************************************9 PP

                    K-box  89 eenkaLrk 96 
                              +++++ ++
  Sme2.5_04194.1_g00003.1 178 RAHHQHQQ 185
                              99998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-411776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.6691777IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-331890IPR002100Transcription factor, MADS-box
CDDcd002651.49E-461894No hitNo description
PRINTSPR004044.0E-331939IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003198.5E-272673IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-335475IPR002100Transcription factor, MADS-box
PfamPF014861.2E-22101181IPR002487Transcription factor, K-box
PROSITE profilePS5129713.821103192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDFQSDLTGE ISPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYANNSVKA TIERYKKACS DSSNTGSVSE ANAQYYQQEA SKLRAQIGNL  120
QNQNRNMLGE ALGGLQLKDL KNLEQRIERG ISKIRSKKNE LLFAEIEYMQ KRIAETERAH  180
HQHQQMNLMP GSSSSYHELV PPPQQFDTRN YLQVDGLQTN NHYPRQDQPP LQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-211785169Myocyte-specific enhancer factor 2B
1tqe_Q9e-211785169Myocyte-specific enhancer factor 2B
1tqe_R9e-211785169Myocyte-specific enhancer factor 2B
1tqe_S9e-211785169Myocyte-specific enhancer factor 2B
5f28_A1e-201785169MEF2C
5f28_B1e-201785169MEF2C
5f28_C1e-201785169MEF2C
5f28_D1e-201785169MEF2C
6byy_A1e-201785169MEF2 CHIMERA
6byy_B1e-201785169MEF2 CHIMERA
6byy_C1e-201785169MEF2 CHIMERA
6byy_D1e-201785169MEF2 CHIMERA
6c9l_A9e-211785169Myocyte-specific enhancer factor 2B
6c9l_B9e-211785169Myocyte-specific enhancer factor 2B
6c9l_C9e-211785169Myocyte-specific enhancer factor 2B
6c9l_D9e-211785169Myocyte-specific enhancer factor 2B
6c9l_E9e-211785169Myocyte-specific enhancer factor 2B
6c9l_F9e-211785169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankTOMTAG1A0.0L26295.1 Lycopersicon esculentum TAG1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019067518.11e-166floral homeotic protein AGAMOUS isoform X1
SwissprotQ401681e-162AG_SOLLC; Floral homeotic protein AGAMOUS
TrEMBLM1CRK81e-163M1CRK8_SOLTU; Uncharacterized protein
STRINGSolyc02g071730.2.11e-161(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-112MIKC_MADS family protein
Publications ? help Back to Top
  1. Pan IL,McQuinn R,Giovannoni JJ,Irish VF
    Functional diversification of AGAMOUS lineage genes in regulating tomato flower and fruit development.
    J. Exp. Bot., 2010. 61(6): p. 1795-806
    [PMID:20335407]
  2. Gimenez E, et al.
    TOMATO AGAMOUS1 and ARLEQUIN/TOMATO AGAMOUS-LIKE1 MADS-box genes have redundant and divergent functions required for tomato reproductive development.
    Plant Mol. Biol., 2016. 91(4-5): p. 513-31
    [PMID:27125648]