PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04151.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 313aa    MW: 35217.8 Da    PI: 7.1509
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04151.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.57.4e-191461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd++l++ +k++G g+W++ ++  g++R++k+c++rw +yl
  Sme2.5_04151.1_g00003.1 14 KGPWTPEEDQKLINHIKKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                             79********************************************97 PP
2Myb_DNA-binding56.56.2e-1867112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++++eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l
  Sme2.5_04151.1_g00003.1  67 RGKFSQEEEQTILNLHAILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
                              89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-27564IPR009057Homeodomain-like
PROSITE profilePS5129418.121961IPR017930Myb domain
SuperFamilySSF466895.47E-3211108IPR009057Homeodomain-like
SMARTSM007174.7E-161363IPR001005SANT/Myb domain
PfamPF002491.3E-171461IPR001005SANT/Myb domain
CDDcd001675.92E-131661No hitNo description
PROSITE profilePS5129427.18762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-2865117IPR009057Homeodomain-like
SMARTSM007175.4E-1766114IPR001005SANT/Myb domain
PfamPF002491.1E-1667112IPR001005SANT/Myb domain
CDDcd001671.66E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRSPCCDET GLKKGPWTPE EDQKLINHIK KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQTILN LHAILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
YDPMTHRPRT DIFNSLPHLI ALAKLKELVE HHNSSWEGQQ ASIAMRSLQS EVATLQYLNF  180
LLQPQNMLAN NTNIPETEAY NNLLNSMKDD QIIIGNNSFN NINIPPPNST SLQDSTPFSH  240
LPELQDMINT PTTTTSSTSP WQLPPPATSS RDQSNSSIIN IGEGDIPPLV GGANLNSVWP  300
DILLEDSFFH DIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00503DAPTransfer from AT5G10280Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-133HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355335.11e-174PREDICTED: transcription factor MYB39-like
SwissprotQ9SBF31e-100MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A3Q7G2L71e-166A0A3Q7G2L7_SOLLC; Uncharacterized protein
STRINGSolyc04g056310.2.11e-167(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-100myb domain protein 93
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]