PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04149.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 343aa    MW: 39841 Da    PI: 6.333
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04149.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.51.7e-36371282102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+ye+++++++++++sw++ g+sfvv+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+k++ e+         weF+++ F 
  Sme2.5_04149.1_g00004.1  37 FLTKTYEMVDESSIDHIVSWNRGGQSFVVWDPHAFSTTLLPRFFKHNNFSSFVRQLNTYGFRKIDPER---------WEFTNEAFL 113
                              9****************************************************************999.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              kg+k+ll++ikr+k+
  Sme2.5_04149.1_g00004.1 114 KGNKHLLRNIKRRKT 128
                              *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.6E-5933126IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.0E-3933126IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.43E-3633126IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.3E-3237126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-183760IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-187587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-1888100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MMNHSYLVKE EFPGSSSPPP PIPQPMEGLH DIGPPPFLTK TYEMVDESSI DHIVSWNRGG  60
QSFVVWDPHA FSTTLLPRFF KHNNFSSFVR QLNTYGFRKI DPERWEFTNE AFLKGNKHLL  120
RNIKRRKTPN SQPLHLPRTE QGLGPCVELG RFGLDGEVDR LRRDKQVLMM ELVKLRQNQQ  180
NTRAYLRSLE LRLQGTERKQ QQMMNFLARA MQNPEFVQQL IQQKGKRKEI EEDITKKRRQ  240
PIDYQGLSTL HVGQSSRIIK SEPLEFGQVS ELEALALEMQ GFGRARRNQQ QDAIQGLEQF  300
DKELDMGFWE ELFNDEDVSG NEDGQEEDVN VLAERLGFLD SSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-233512827131Heat shock factor protein 1
5d5v_B8e-233512827131Heat shock factor protein 1
5d5v_D8e-233512827131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2679990.0KF267999.1 Capsicum annuum heat stress transcription factor A-6b (HSFA6B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247199.10.0heat stress transcription factor A-7a isoform X8
RefseqXP_010326416.10.0heat stress transcription factor A-7a isoform X8
RefseqXP_010326417.10.0heat stress transcription factor A-7a isoform X8
RefseqXP_010326418.10.0heat stress transcription factor A-7a isoform X8
RefseqXP_010326419.10.0heat stress transcription factor A-7a isoform X9
RefseqXP_010326420.10.0heat stress transcription factor A-7a isoform X9
RefseqXP_019070996.10.0heat stress transcription factor A-7a isoform X9
RefseqXP_025888691.10.0heat stress transcription factor A-7a isoform X7
RefseqXP_025888692.10.0heat stress transcription factor A-7a isoform X8
RefseqXP_025888693.10.0heat stress transcription factor A-7a isoform X9
SwissprotQ6VBB21e-121HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A3Q7I4040.0A0A3Q7I404_SOLLC; Uncharacterized protein
STRINGSolyc09g065660.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-116heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]