PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04124.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 320aa    MW: 35629.9 Da    PI: 6.7091
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04124.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151462148
                             TSSS-HHHHHHHHHHHHH.TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkq.lGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEde+lv+++k  +G g+W++ ++  g+ R++k+c++rw +yl
  Sme2.5_04124.1_g00002.1 14 KGPWTPEEDEKLVEYIKNnHGHGSWRSLPHLAGLARCGKSCRLRWTNYL 62
                             79**************8537888************************97 PP
2Myb_DNA-binding475.9e-1568113148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg+++ eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Sme2.5_04124.1_g00002.1  68 RGPFSHEEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113
                              89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-24565IPR009057Homeodomain-like
PROSITE profilePS5129416.419962IPR017930Myb domain
SuperFamilySSF466893.23E-2811109IPR009057Homeodomain-like
SMARTSM007171.1E-91364IPR001005SANT/Myb domain
PfamPF002494.9E-141462IPR001005SANT/Myb domain
CDDcd001672.01E-91662No hitNo description
PROSITE profilePS5129424.663117IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-2566117IPR009057Homeodomain-like
SMARTSM007176.4E-1467115IPR001005SANT/Myb domain
PfamPF002495.4E-1468113IPR001005SANT/Myb domain
CDDcd001678.62E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRTPCCDKK GLKKGPWTPE EDEKLVEYIK NNHGHGSWRS LPHLAGLARC GKSCRLRWTN  60
YLRPDIKRGP FSHEEEKLVI QLHGILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLLSM  120
GIDPQTNEPN SAPDGVLISP PTSLASRHMA QWESARLEAE ARLSRGSKLL VPSSVGRSGT  180
DCFLRIWNSE VGEAFRKFNK KEGRTTCESS ASQASSSTKY GSVSGITTEI DLSFAANQND  240
DTEWKKSQPW MEDVLKGYED TCSSSGLEDS SESALQLLLD FPSNNDLSFL GQSDTYSLYP  300
EFLSESSFKC SPAEHELGFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29121175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240108.10.0transcription factor MYB41-like
SwissprotQ9M2D91e-114MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A3Q7GMQ50.0A0A3Q7GMQ5_SOLLC; Uncharacterized protein
STRINGSolyc05g048830.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-110myb domain protein 17