PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04024.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 488aa    MW: 55463.2 Da    PI: 5.0041
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04024.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS269.31.3e-821074733373
                     GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgd....pmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl 83 
                              +lLl  Aea+++++l la+ ++ rl+++ s++ +    p++Rla yft+AL  + ++ s++el ++ + +  s  + +++++a+++
  Sme2.5_04024.1_g00004.1 107 DLLLMGAEAIEARNLDLASIVVLRLNTILSNQENrensPVERLALYFTQALLCKTLNnSSHELLSQNQNQYHS--EFTSSMTAFQM 190
                              789999*********************97766654566************97655552666666544444443..5888889999* PP

                     GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169
                              ++e+sP++kf+h+taNqaIlea++g+++vHi+Dfdi++G+QWp+L+  L +R +  +slRiT ++s ++ s+  +++tg+rL++fA
  Sme2.5_04024.1_g00004.1 191 LQEISPYVKFAHFTANQAILEATKGSQQVHILDFDIMEGIQWPPLMVDLVERGNTNASLRITSLVS-DHLSSCHVQKTGKRLQEFA 275
                              ******************************************************************.666**************** PP

                     GRAS 170 eelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhns 250
                              +++++pf f+ ++   le  +le+++v + + +l+Vn++++  +++++  sl +   ++ + + +lsPk+vv+ve+e    ++  s
  Sme2.5_04024.1_g00004.1 276 DSINLPFMFDQVL---LE--DLEKIQVMEgHNNLIVNVMIHQLHMPQRGSSLVK---TFFNGLTKLSPKIVVLVEEElfnlSKIPS 353
                              **********983...33..458889999899*********99**988888888...********************866555578 PP

                     GRAS 251 esFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaa 334
                               sF+e f++al++y+++ ds+  +++     + +++E+e+++ +i + + +   e+ er+    kW++ l +  GF+++p+s++++
  Sme2.5_04024.1_g00004.1 354 MSFVEFFCDALHHYTTITDSILGGFGGGYkLALRVIEKEFIRVRILESLRQFPCEKLERE----KWSKGLYSlKGFRQIPMSSSNV 435
                              8********************6666665538999****************9999966665....6**9987658************ PP

                     GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               qak+l++ ++  gy v++e+  l l+Wk+rpL+s+S W
  Sme2.5_04024.1_g00004.1 436 RQAKHLVSLFS-GGYWVQNEQCKLALCWKSRPLTSASIW 473
                              ***********.89************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.65179455IPR005202Transcription factor GRAS
PfamPF035144.4E-80107473IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MECENFQPSY INPFLEYSNI DTPFSWNNPS IINPQCSIQD FVTIVNDVDI LDYFPNDFDF  60
IDGDVDTPLQ NTQQQVVLGD TEFSREGQKS RIKSLQDQLM EETSVTDLLL MGAEAIEARN  120
LDLASIVVLR LNTILSNQEN RENSPVERLA LYFTQALLCK TLNNSSHELL SQNQNQYHSE  180
FTSSMTAFQM LQEISPYVKF AHFTANQAIL EATKGSQQVH ILDFDIMEGI QWPPLMVDLV  240
ERGNTNASLR ITSLVSDHLS SCHVQKTGKR LQEFADSINL PFMFDQVLLE DLEKIQVMEG  300
HNNLIVNVMI HQLHMPQRGS SLVKTFFNGL TKLSPKIVVL VEEELFNLSK IPSMSFVEFF  360
CDALHHYTTI TDSILGGFGG GYKLALRVIE KEFIRVRILE SLRQFPCEKL EREKWSKGLY  420
SLKGFRQIPM SSSNVRQAKH LVSLFSGGYW VQNEQCKLAL CWKSRPLTSA SIWVPISSSP  480
SASSSISF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-43874771381Protein SCARECROW
5b3h_D2e-43874771381Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058084.10.0nodulation-signaling pathway 2 protein-like
TrEMBLM0ZXK60.0M0ZXK6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000101580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.18e-48GRAS family protein