PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03997.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 448aa    MW: 48806.6 Da    PI: 8.6973
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03997.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.23.9e-29142200159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+++prsYY Ct +gC+v+k+ver+   p+ v++tY g+ nh+
  Sme2.5_03997.1_g00007.1 142 LDDGYRWRKYGQKVVKGNPNPRSYYNCTNPGCNVRKHVERAPFKPTSVITTYDGKQNHN 200
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-32127202IPR003657WRKY domain
SuperFamilySSF1182902.62E-25134202IPR003657WRKY domain
PROSITE profilePS5081134.371137202IPR003657WRKY domain
SMARTSM007742.1E-31142201IPR003657WRKY domain
PfamPF031061.4E-21143199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MQLDNVDPTG TRLNNQLALK TIQQGPTAGG LEGKNDSFET TSLANLHAEY CRGSTTLHSS  60
TAQLGSADAN DISSTFPNNE VDHGTRGNVS LDCNDEGDES ESKIRRIERS STDTSGTRRS  120
IRERSIREPR IVVQTTSEVD LLDDGYRWRK YGQKVVKGNP NPRSYYNCTN PGCNVRKHVE  180
RAPFKPTSVI TTYDGKQNHN VPLIYCQTSV ITTYDGKQNH NVPAERSSNQ ANSDASNSRS  240
KPRTTNAQGH AGRTEPTQVQ NSRKRYGRAP SFDPTSQFNS SGTNQQQGLT GHAMTGFNSD  300
QRQFSAPADS SGTNQQQGLT GHAMTGFNSD QRQFSAPADS SGTNQQQGLT GHAMTGFNSD  360
QRQFSAPAHS SGTKQQQSLT GHAMTGFNSD QRQFSAPADS SGTNQQQSLT GHAMTRFSSH  420
QHQFSAPAHT YPGRPQPVND AGFMLPER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-36133202877Probable WRKY transcription factor 4
2lex_A7e-36133202877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352570.11e-136PREDICTED: probable WRKY transcription factor 2
TrEMBLM1ASL71e-134M1ASL7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000293281e-135(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.13e-35WRKY DNA-binding protein 4