PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03997.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 406aa    MW: 44184.4 Da    PI: 6.1809
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03997.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.51.3e-28266324160
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              ++DgynWrKYGq +vkgsefprsYY+C++++C vkk++ r++  ++v+e++Y+g Hnh+k
  Sme2.5_03997.1_g00004.1 266 VEDGYNWRKYGQNQVKGSEFPRSYYKCAHPNCFVKKEIARNH-KGHVTEVIYNGAHNHPK 324
                              58***************************************9.9**************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.897261325IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.2E-25264325IPR003657WRKY domain
SuperFamilySSF1182901.44E-22265325IPR003657WRKY domain
SMARTSM007743.8E-28266324IPR003657WRKY domain
PfamPF031066.6E-23267323IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGEYDHFANF GDCIPPSPRP TSKALFSSLV ANNFEGWPPH MEETNESITR NVVVEPQEHV  60
TWCNSDGKDG VGTGATTDQI VKSSAPSEQA TSSRGGLMER MAARAGFNAP RLNTAGLRPP  120
AMSQNQEVNS PYLSIAAGIS LSVLLYSPVF LAPISQYFVV VTALVSVFSF SKCLEMLYFK  180
PRIYQKQPLY LDGVGVSTLL ALEFIGLRGW GAGSRGPYKW YQSLGLEGRC DGPTCADQWA  240
SSIILLVSEP RFEGQIDEDS DGDASVEDGY NWRKYGQNQV KGSEFPRSYY KCAHPNCFVK  300
KEIARNHKGH VTEVIYNGAH NHPKPLPNRI SVLRSSNSSS VMQLDNVDPT GTGLNNELAL  360
KTIQQGPTAG GLEGKNDSFD TTSLADLHSE YCRGSTTLHS SAAQLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-152663251474WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352570.11e-137PREDICTED: probable WRKY transcription factor 2
TrEMBLM1ASL71e-136M1ASL7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000293281e-136(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.12e-34WRKY DNA-binding protein 34