PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03973.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family DBB
Protein Properties Length: 346aa    MW: 37820.9 Da    PI: 6.167
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03973.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.31e-05447542
                 zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                              C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  Sme2.5_03973.1_g00001.1  4 QCNVCEVAEANVLCCADEAALCWSCDEKVHAAnklaskHQRVPL 47
                             7*****999*********************66899999999986 PP
2zf-B_box18.63.8e-061151391537
                 zf-B_box  15 qlfCedCqqllCedClleeHkg..H 37 
                               +fC +++ llC++C  ++H    H
  Sme2.5_03973.1_g00001.1 115 YFFCLEDRALLCRKCDIAIHTAnpH 139
                              69******************55674 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.594147IPR000315B-box-type zinc finger
CDDcd000214.34E-7347No hitNo description
SMARTSM003362.8E-10447IPR000315B-box-type zinc finger
SMARTSM003364.1E-7108148IPR000315B-box-type zinc finger
CDDcd000211.82E-4116148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MKIQCNVCEV AEANVLCCAD EAALCWSCDE KVHAANKLAS KHQRVPLSGS SSSMPMCDIC  60
QVNLMDSVDI GANDSVAVRY GLHMACGELV YRFLMLNYGI PASFIWQSFC ETVGYFFCLE  120
DRALLCRKCD IAIHTANPHV AVHQRFLLTG VKVGLEPVDP GGASSSGTSQ SIQKVSEPKS  180
APLSKRNPPL SLDNQFNKVP HHASGVGDFA PTKSPFAGGS AAGNEFLGLH FFKSEVWVQW  240
MTDHLSACIK IYQADNGKLG ESDSSSILRF EDEELDGDEC LGQVPDTSWA VPQVPSPPTA  300
SGLYWPKTYQ NPFDSTVFVP DISYSLSSSL QQQPPSGTRL KRRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-131HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348330.11e-169PREDICTED: B-box zinc finger protein 22 isoform X1
TrEMBLM1AA751e-168M1AA75_SOLTU; B-box zinc finger protein 18
STRINGPGSC0003DMT4000181961e-169(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.24e-71light-regulated zinc finger protein 1