PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03957.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 545aa    MW: 60743 Da    PI: 7.2557
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03957.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS417.89.5e-1281705401374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l+elL++cAeav++ d + a+ l++ l++++s +g+pmqRl ay++e+L+arl++s+s++yk+l++se +   sse l++++++++
  Sme2.5_03957.1_g00007.1 170 LKELLVACAEAVDEADISTAEVLMNVLEKRVSVSGEPMQRLSAYMLEGLRARLLSSGSNIYKKLKCSEPT---SSELLSYMQVLYN 252
                              5799*****************************************************************9...9************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              ++P++kf+++ aN  I ea+++e+r+HiiDf+i qG QW+ L++aLa Rp+gpp lRiTgv++ +s   +   l+ +g+rLa++Ae
  Sme2.5_03957.1_g00007.1 253 ITPYFKFAYMSANVVIGEAMKNENRIHIIDFQIAQGSQWMFLIHALARRPGGPPFLRITGVDDFQSAhaRGGGLQLVGKRLASIAE 338
                              ***************************************************************9988889999************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              ++gvpfef+  +a +  +++le+Lrv++gE+laVn+ ++lh+++desvs+ ++rd++L+lvks sPk+v +veqe+++n+++Fl r
  Sme2.5_03957.1_g00007.1 339 SCGVPFEFHN-AALSGCEVKLENLRVRHGESLAVNFPYMLHHMPDESVSTVNHRDRLLRLVKSFSPKIVALVEQEMNTNTAPFLPR 423
                              **********.8999*********************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f e+l+y+ a+f+s+++  pr++ +ri  E+++++r++vn++acega+r+erhe ++kWr+rl +aGF+p pls  aa+ +k +l+
  Sme2.5_03957.1_g00007.1 424 FRETLDYHKAMFESVDVARPRDDIQRIRSEEHCIARDVVNLIACEGADRVERHELFGKWRSRLLMAGFTPCPLSPLAAEAIKDMLK 509
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               ++s+ yr+ e++g+l++gWk+r+L + SaW+
  Sme2.5_03957.1_g00007.1 510 DYSSN-YRLAESQGALYIGWKNRALATSSAWQ 540
                              ***77.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.568144521IPR005202Transcription factor GRAS
PfamPF035143.3E-125170540IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MQAFQGPPRS CSVQKLSQPM QQYYTPSRAF DNSNCNDSSS SRTQVSLKTP DEKFFTVDSF  60
PATDCAIYNA DPSIIVSSNR ISFSPQCSQS YMSEKLRLYE NTDGSPASGC SGVDDSNGKK  120
HELRELNNKL LRPESDIDDS CSCSLNGVAS KRFSLTGRNQ VLDVASRLDL KELLVACAEA  180
VDEADISTAE VLMNVLEKRV SVSGEPMQRL SAYMLEGLRA RLLSSGSNIY KKLKCSEPTS  240
SELLSYMQVL YNITPYFKFA YMSANVVIGE AMKNENRIHI IDFQIAQGSQ WMFLIHALAR  300
RPGGPPFLRI TGVDDFQSAH ARGGGLQLVG KRLASIAESC GVPFEFHNAA LSGCEVKLEN  360
LRVRHGESLA VNFPYMLHHM PDESVSTVNH RDRLLRLVKS FSPKIVALVE QEMNTNTAPF  420
LPRFRETLDY HKAMFESVDV ARPRDDIQRI RSEEHCIARD VVNLIACEGA DRVERHELFG  480
KWRSRLLMAG FTPCPLSPLA AEAIKDMLKD YSSNYRLAES QGALYIGWKN RALATSSAWQ  540
LPPGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-5917753925377Protein SCARECROW
5b3h_D9e-5917753925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346781.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_006346782.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_015163995.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A3Q7G1F00.0A0A3Q7G1F0_SOLLC; Uncharacterized protein
STRINGSolyc04g014830.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13