PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03919.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARR-B
Protein Properties Length: 503aa    MW: 56228.1 Da    PI: 8.8604
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03919.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like59.19.2e-19147196454
                  G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                              l+Wt +LH++F++av+ L G+ +  Pk+ile mkv++Lt+ +++SHLQk R
  Sme2.5_03919.1_g00003.1 147 LEWTDDLHDKFMKAVRLL-GEGRCYPKEILEEMKVPSLTRMQIASHLQKCR 196
                              79****************.9*****************************98 PP
2Response_reg21.89.7e-0957931105
                              SHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HH CS
             Response_reg  31 dgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpe 105
                              ++++a+  l + +  +D+++l +  + m  ++l+ +  + +  +  +++  h+ e++a++al+ Ga  ++ Kpfd+e
  Sme2.5_03919.1_g00003.1   5 SASAAMSVLSKGKqkVDVMILNVHSSSMLSSNLVAQVVALD-IVSLVICDEHN-EPLAKKALEEGAYLYVKKPFDKE 79 
                              566677777444445**********************9998.56666666665.6*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011013.991189IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23004.0E-83108No hitNo description
SuperFamilySSF521721.24E-63106IPR011006CheY-like superfamily
PROSITE profilePS512949.846137200IPR017930Myb domain
SuperFamilySSF466891.16E-14144197IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-18146197IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-18147197IPR006447Myb domain, plants
PfamPF002498.8E-6148195IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MMVGSASAAM SVLSKGKQKV DVMILNVHSS SMLSSNLVAQ VVALDIVSLV ICDEHNEPLA  60
KKALEEGAYL YVKKPFDKEI MKYLWQFVLR EKMRREKARQ ESRQNRDQMN VEYQLRGKRG  120
RKSMKGVNGG ESQTSATAKV VRQTDYLEWT DDLHDKFMKA VRLLGEGRCY PKEILEEMKV  180
PSLTRMQIAS HLQKCRRNNW RSPKERKTLR HRSGQASASG LHVRRSSFRR FGTMPCLHQT  240
NVTNLQPIPR PTQRGPEFPF PPLDTSNLFG RGESSIQPQL YRAQLQVQPH FLNICNPFHY  300
PFLSAQNDAA GGIQHEPLFG IVNPQGLQGA PNIGNANYRL GVAFNSGNHH SRSDYSLDLN  360
VTQGETYSGS TIMFGTDIRN GTNDGSNLNV NVGNVINYSS SAAISDIHAR SVTYNGLGAA  420
NSNLQQYIGE SNMSNPGNIA VVSYESNAEG RNSNEEENCD AYFNTNNMDY PFQNLEPPSA  480
SLPNEQGREF HQVYTDDQVG ASI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165596.10.0PREDICTED: putative two-component response regulator ARR13
TrEMBLM1CN231e-180M1CN23_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000709841e-180(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.14e-22response regulator 2