PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03810.1_g00007.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bZIP

Protein Properties

Length: 493aa MW: 54946.6 Da PI: 8.2713

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03810.1_g00007.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.6	1.5e-09	219	256	6	43
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 rr+++NReAA++sR RKka++++Le+ L++ + Sme2.5_03810.1_g00007.1 219 TLRRLAQNREAAKKSRIRKKAYVQQLETSRIRLSQLEQ 256 579************************86655555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0026	214	291	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	3.8E-7	218	260	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.7E-7	218	258	No hit	No description
SuperFamily	SSF57959	1.38E-6	219	260	No hit	No description
PROSITE pattern	PS00036	0	221	236	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.7E-32	299	373	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MASQGIRETG LTDSGPSHHN HNMPYAVFRG LNPASTSFMY HSTPNGNQEG SGFDFGELEE 60 AFVLQGFKMS NDEAKASLYA EAATGKPAAT LEMFPSWPMR FQQTPRENSK SREESTDSGS 120 LSSRAQPHFE PESPISRKAS SDHQLQITHK SQEQQQLQDM ASNSNNNPRT GVLQTELSSK 180 SNSEKKKGAA STSERVLDPK PMRVGFAKSN IFSVNPTQTL RRLAQNREAA KKSRIRKKAY 240 VQQLETSRIR LSQLEQELQR ASSQGIFFGG GTAAGSNISS GAAVFDMEYS RWLDDDQRHM 300 SELRTALQAH LSDGDLRLIV DGYIAHYNEI FNLKGVAAKS DVFHLITGMW TTPAERCFLW 360 MGGFRPSELI KMLIGQLDPL TEQQVVGIYS LQQSSQQAEE ALSQGLEQLQ QSLIDTIATA 420 SLHDGMHHMA LALGKLSNLE GFVRQADNLR QQTLHQLHRI LTVRQAARCF LVIGEYYGRL 480 RALSSLWLSR PRE

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MASQGIRETG LTDSGPSHHN HNMPYAVFRG LNPASTSFMY HSTPNGNQEG SGFDFGELEE  60
AFVLQGFKMS NDEAKASLYA EAATGKPAAT LEMFPSWPMR FQQTPRENSK SREESTDSGS  120
LSSRAQPHFE PESPISRKAS SDHQLQITHK SQEQQQLQDM ASNSNNNPRT GVLQTELSSK  180
SNSEKKKGAA STSERVLDPK PMRVGFAKSN IFSVNPTQTL RRLAQNREAA KKSRIRKKAY  240
VQQLETSRIR LSQLEQELQR ASSQGIFFGG GTAAGSNISS GAAVFDMEYS RWLDDDQRHM  300
SELRTALQAH LSDGDLRLIV DGYIAHYNEI FNLKGVAAKS DVFHLITGMW TTPAERCFLW  360
MGGFRPSELI KMLIGQLDPL TEQQVVGIYS LQQSSQQAEE ALSQGLEQLQ QSLIDTIATA  420
SLHDGMHHMA LALGKLSNLE GFVRQADNLR QQTLHQLHRI LTVRQAARCF LVIGEYYGRL  480
RALSSLWLSR PRE

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT693387	0.0	KT693387.1 Capsicum annuum AILZ1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015080261.1	0.0	transcription factor TGA9 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A3Q7H0D9	0.0	A0A3Q7H0D9_SOLLC; Uncharacterized protein
STRING	Solyc06g074320.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-162	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]