PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03788.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 220aa    MW: 24251.2 Da    PI: 8.9917
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03788.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-202776255
                      AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aaka++aa++ l+g
  Sme2.5_03788.1_g00003.1 27 KFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAAKAYDAAARTLRG 76
                             79*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.12E-182784No hitNo description
PfamPF008479.2E-132776IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-312784IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-222785IPR016177DNA-binding domain
PROSITE profilePS5103222.9852784IPR001471AP2/ERF domain
SMARTSM003802.9E-372790IPR001471AP2/ERF domain
PRINTSPR003674.6E-102839IPR001471AP2/ERF domain
PRINTSPR003674.6E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MRRGRATPAA VAAPVKANGS GGLKEIKFRG VRKRPWGRFA AEIRDPWKKT RVWLGTFDSA  60
EDAAKAYDAA ARTLRGPKAK TNFPLPLYSH HHQFNQTLNP NDPLIDPRLY AQEAPIVCQR  120
PTSSSMSSTV ESFSGPRPPR QQTAVLPSTR KHPRSPPIVP DDCRSDCDSS SSVVEDGEGD  180
NENIVSSSFR NPLPFDLNFP PPMDDVYANS TDLYCTALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-202889668ATERF1
3gcc_A2e-202889668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1258590.0JN125859.1 Solanum tuberosum ethylene response factor ERF4 (ERF4) mRNA, complete cds.
GenBankJX8274080.0JX827408.1 UNVERIFIED: Solanum tuberosum AP2 protein c6-like mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305578.11e-127ethylene-responsive transcription factor 3-like
SwissprotQ9SXS85e-77ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A0V0HV081e-138A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGPGSC0003DMT4000373591e-128(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33302347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.15e-35ethylene responsive element binding factor 3