PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03773.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 497aa MW: 54193.2 Da PI: 4.5484 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 86.7 | 1.7e-27 | 175 | 240 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l+e++e+g+++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg Sme2.5_03773.1_g00007.1 175 RYDSSLGLLTKKFINLIEHAEDGMLDLNQAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 240 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.5E-29 | 173 | 242 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.22E-17 | 175 | 238 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.7E-34 | 175 | 240 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.3E-24 | 177 | 240 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF144074 | 3.66E-34 | 254 | 357 | No hit | No description |
Pfam | PF16421 | 2.4E-34 | 256 | 355 | IPR032198 | E2F transcription factor, CC-MB domain |
CDD | cd14660 | 3.43E-50 | 256 | 357 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MTGSGTSTGA AAPPTDQSSS AAVNGGGRSQ ISHPMKRYLP FASMRPPFVA PEDYHRFSTP 60 GVDSTIGGAS LQPEAIVVKS PHSWIGSAVL QPEASVVKST ALKRKTGYIK EVESSEWTAN 120 SGYADVVNSP LGTPVSAKGG RAHGRSRATK NNRSGPQTPV YNAGSPSPLT PASCRYDSSL 180 GLLTKKFINL IEHAEDGMLD LNQAADTLEV QKRRIYDITN VLEGIGLIEK KLKNRIQWKG 240 VDTSRPGEVD NDAAILKAEI DSLSMEERRL DERIREMQEN LRDMSEDENN QRWLFVTEED 300 IKSIPCFQNE TLIAVKAPHG TTLEVPDPDE AVDYPQRRYR IILRSTMGPI DVYLVSQFEE 360 KFEEMNGAEP STTIPVASSS GSKDYPAAEI STVSNSVTEN EGQTHNVDQL SSDLGTSQDY 420 NGGMMKILPS DVDNDADYWL LSDANVSITD MWKTDSTVEW DGETLLRDFG IDDLGTPRAQ 480 APSTIADVPA PMNVPPR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 5e-26 | 168 | 241 | 2 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00661 | PBM | Transfer from Pp3c1_6880 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC239738 | 2e-91 | AC239738.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-240p19 map 1, complete sequence. | |||
GenBank | HG975440 | 2e-91 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 2e-91 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348486.1 | 0.0 | PREDICTED: transcription factor E2FA isoform X1 | ||||
Swissprot | Q9FNY0 | 1e-158 | E2FA_ARATH; Transcription factor E2FA | ||||
TrEMBL | M1BCW1 | 0.0 | M1BCW1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400042347 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1077 | 24 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36010.1 | 1e-162 | E2F transcription factor 3 |
Publications ? help Back to Top | |||
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