PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_03732.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 28248.3 Da PI: 7.9284 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 140 | 189 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ + +r++lg+f taeeAa+a+++a+ +++g Sme2.5_03732.1_g00002.1 140 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFSTAEEAARAYDRAAIEFRG 189 59*******.**********94....36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.8E-32 | 140 | 197 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-38 | 140 | 203 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.09E-35 | 140 | 196 | No hit | No description |
PROSITE profile | PS51032 | 25.001 | 140 | 197 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-22 | 140 | 197 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-14 | 140 | 189 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-12 | 141 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-12 | 163 | 179 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MHKSNKRFKQ EGTSNEFQHQ PRLTGDQEYS VMVATLENVI SGNIPSQEFN SFSPFQYSTV 60 TTTTTITSSS SPSTSFEQVL GVPAEQEPCQ FCRIQGCLGC DIFETTFSSS AAPVVAAPVA 120 DNKKKSSATT TTIAKKKKKN YRGVRQRPWG KWAAEIRDPR KAARVWLGTF STAEEAARAY 180 DRAAIEFRGP RAKLNFSFAD YTVDTPEQQS ISSSSPQQLS EEPKQLQQGN NNSDFGNEIW 240 DQLMGDSIIN PSFAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-24 | 139 | 196 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-24 | 137 | 196 | 2 | 62 | ATERF1 |
3gcc_A | 4e-24 | 137 | 196 | 2 | 62 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 138 | KKKSSATTTTIAKKKKK |
2 | 133 | 139 | AKKKKKN |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-169 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015085937.1 | 1e-121 | ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | M1CFE5 | 1e-117 | M1CFE5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400066343 | 1e-118 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 5e-30 | redox responsive transcription factor 1 |