PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03714.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 283aa    MW: 32096.7 Da    PI: 6.3499
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03714.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.5e-151663148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g W+++Ed++l +++ ++G g+W++++   g+ R +k+c++rw +yl
  Sme2.5_03714.1_g00001.1 16 KGLWSPDEDDRLRNYIIKYGHGCWSSVPINAGLQRNGKSCRLRWINYL 63
                             678*******************************************97 PP
2Myb_DNA-binding54.43e-1769114148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg+++ eE++ ++ +++++G++ W+ Ia++++ gRt++++k++w++yl
  Sme2.5_03714.1_g00001.1  69 RGAFSLEEEDTILTLHAMFGNK-WSQIAQHLP-GRTDNEIKNHWHSYL 114
                              89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-211166IPR009057Homeodomain-like
PROSITE profilePS5129416.8941163IPR017930Myb domain
SuperFamilySSF466893.3E-2914110IPR009057Homeodomain-like
SMARTSM007173.3E-111565IPR001005SANT/Myb domain
PfamPF002493.3E-131663IPR001005SANT/Myb domain
CDDcd001679.53E-101963No hitNo description
PROSITE profilePS5129426.8364118IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-2667118IPR009057Homeodomain-like
SMARTSM007173.2E-1668116IPR001005SANT/Myb domain
PfamPF002493.1E-1669114IPR001005SANT/Myb domain
CDDcd001671.35E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGCKVAAEKP KAKHKKGLWS PDEDDRLRNY IIKYGHGCWS SVPINAGLQR NGKSCRLRWI  60
NYLRPGLKRG AFSLEEEDTI LTLHAMFGNK WSQIAQHLPG RTDNEIKNHW HSYLKKRVSK  120
MAAENEGHTK SVSTESSPSL KKLTPQNSSL DSFEHMEGSL ADSDQSVYPR EPQKSNLPKV  180
LFAEWLSLDQ FSGQDFQNSG NFEPSKNNFG YNNSELHDIF MHSLPMNNDG NSYGNGVNQE  240
INNGTVVDDI FPPQLKFEDP MSGNGFEEFM SGEFNINDDV MYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-231611827128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-137HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353308.10.0PREDICTED: transcription factor LAF1-like
SwissprotQ9M0K48e-57LAF1_ARATH; Transcription factor LAF1
TrEMBLM1B4S40.0M1B4S4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000370800.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-62myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]