PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03706.1_g00010.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 331aa    MW: 37685.6 Da    PI: 7.8402
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03706.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.6e-171462148
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                             rg+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl
  Sme2.5_03706.1_g00010.1 14 RGPWSPEEDAKLKSYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                             89*********************************************97 PP
2Myb_DNA-binding37.27e-1269111246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Sme2.5_03706.1_g00010.1  69 GGFSEEEDRIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                              569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.745962IPR017930Myb domain
SuperFamilySSF466891.1E-2611109IPR009057Homeodomain-like
SMARTSM007175.6E-131364IPR001005SANT/Myb domain
PfamPF002494.5E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-251569IPR009057Homeodomain-like
CDDcd001671.03E-91662No hitNo description
PROSITE profilePS5129421.44463117IPR017930Myb domain
SMARTSM007173.3E-1167115IPR001005SANT/Myb domain
PfamPF002491.8E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-2370117IPR009057Homeodomain-like
CDDcd001675.01E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRAPCCDKN NVKRGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDRIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFGK  120
QRQKQGSKKG KEINSNMPIS NNNDNMNQNH CWPELQPIIP YSTDEPRLIN DHTSIRKLLI  180
KLGGKFSEND QLTNVVSPIS QYPIDNSSMH LMYQNHINLI SSSPIDNVFN NMTAPNTDLY  240
NMDGAARNFT AEFEHMINNN QQKIEGLEFL YQDVLIDKFA STSEGNLDWE SMNPYVFPLS  300
PIVTSSDGGN FQQGVILQEG ALDELRYPMA Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755161e-174HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571495.10.0PREDICTED: transcription factor RAX3-like
TrEMBLA0A1U8GK140.0A0A1U8GK14_CAPAN; Transcription factor RAX3
TrEMBLA0A2G2ZR550.0A0A2G2ZR55_CAPAN; transcription factor RAX3-like
TrEMBLA0A2G3CPG60.0A0A2G3CPG6_CAPCH; Transcription factor RAX3
STRINGPGSC0003DMT4000127020.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.18e-79myb domain protein 36