PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03699.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Dof

Protein Properties

Length: 267aa MW: 29110.2 Da PI: 9.2366

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03699.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.5	1.4e-38	27	87	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+stntkfCyynnysl+qPryfCk+C+ryWt+GG+lrnvPvGgg+rkn++ s Sme2.5_03699.1_g00001.1 27 KDQAMNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCKRYWTEGGTLRNVPVGGGSRKNRRCS 87 57999****************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-28	20	85	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-32	28	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.761	31	85	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	33	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MTAQIAPPNV TCQRTSSTLE KKVRPLKDQA MNCPRCNSTN TKFCYYNNYS LTQPRYFCKT 60 CKRYWTEGGT LRNVPVGGGS RKNRRCSSSS SSLSSVSSSQ KLLELNPNPS LSSLQNPNYN 120 LNLGSNHDLN LGFPSINMHD HNNYFRGVPQ FLEFPKIDKG NSGVDQFSSS TSNTIPVSAL 180 DLLRTGIASR GLSAFISSSS SPPDLNALYT SSGVQENGAK MIFPFGCLNK QFSGENHHNN 240 NSESKGQENS SSAGYWNDGM LGGGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975522	1e-164	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006362132.1	1e-156	PREDICTED: dof zinc finger protein DOF2.5-like isoform X1
Swissprot	Q9ZPY0	4e-42	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	M1BMN5	1e-154	M1BMN5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400048612	1e-155	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	2e-42	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]